Mercurial > repos > galaxyp > peptideshaker

view admin_scripts/build_mods_loc.py @ 28:432140bcc7fe draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 450e533463b5e16e694dff6a5f6e97698c9d0521-dirty
author galaxyp
date Wed, 08 Jun 2016 13:05:47 -0400
parents 2cafc729b2ae
children bb0130ff73ce
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#!/usr/bin/env python

import xml.etree.ElementTree as ET
from os.path import exists

with open("searchgui_mods.loc.sample", "w") as output:
    for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]:
        tree = ET.parse(mods_path)
        modifications_el = tree.getroot()
        for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"):
            name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name")
            output.write("%s\n" % name_el.text.lower())