Mercurial > repos > galaxyp > peptideshaker
view admin_scripts/build_mods_loc.py @ 51:66690eb50a32 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 1165d86d2f2714093577c54b7e6d3a7149778bd3
author | galaxyp |
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date | Mon, 31 Dec 2018 02:20:36 -0500 |
parents | 2cafc729b2ae |
children | bb0130ff73ce |
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#!/usr/bin/env python import xml.etree.ElementTree as ET from os.path import exists with open("searchgui_mods.loc.sample", "w") as output: for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: tree = ET.parse(mods_path) modifications_el = tree.getroot() for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") output.write("%s\n" % name_el.text.lower())