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view test-data/peptide_shaker_psm_result2.tabular @ 32:ff592231f118 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 047efcfa1e9f45648e6e81d3776a1a93e2cfe46d
| author | galaxyp |
|---|---|
| date | Wed, 25 Jan 2017 15:37:43 -0500 |
| parents | ad60446b1e93 |
| children |
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Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation 1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful 2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful 3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful 4 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful 5 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful 6 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful 7 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful 8 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful 9 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful 10 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful 11 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful 12 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful 13 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful 14 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful 15 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful 16 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful 17 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful 18 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful 19 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful 20 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful 21 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful 22 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful 23 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful 24 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful 25 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful 26 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful 27 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful 28 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful 29 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful 30 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful 31 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful 32 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful 33 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful 34 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful 35 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful 36 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful 37 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful 38 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful 39 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful 40 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful 41 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful 42 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful