# HG changeset patch
# User galaxyp
# Date 1456071204 18000
# Node ID 0986f68fb410b9307c9b4877d93c56ec7e93c3b6
# Parent  815f93bb3e1b9515d38be2b429176436ddeedad9
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty

diff -r 815f93bb3e1b -r 0986f68fb410 peptide_shaker.xml
--- a/peptide_shaker.xml	Fri Nov 06 15:33:34 2015 -0500
+++ b/peptide_shaker.xml	Sun Feb 21 11:13:24 2016 -0500
@@ -473,7 +473,7 @@
                     <when value="0" />
                     <when value="1">
                         <param name="score_neutral_losses" label="Include Neutral Losses in A Score" type="boolean" truevalue="1" falsevalue="0" />
-                        <param name="ptm_threshold" label="The threshold to use for the PTM scores" value="" type="float"
+                        <param name="ptm_threshold" label="The threshold to use for the PTM scores" optional="true" value="" type="float"
                             help="Automatic mode will be used if not set" />
                     </when>
                 </conditional>
diff -r 815f93bb3e1b -r 0986f68fb410 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 06 15:33:34 2015 -0500
+++ b/tool_dependencies.xml	Sun Feb 21 11:13:24 2016 -0500
@@ -4,6 +4,6 @@
         <repository changeset_revision="42249a2266ba" name="package_searchgui_2_1" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="peptide_shaker" version="1.1">
-        <repository changeset_revision="d96500b8f698" name="package_peptideshaker_1_1" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="aa9c3d729470" name="package_peptideshaker_1_1" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>