# HG changeset patch # User galaxyp # Date 1372091952 14400 # Node ID 733c4ee877a4869e276e4da74a3d754ba721f74b # Parent 679a4b0041a41172c8b71a1274dd408a74595bdd Uploaded diff -r 679a4b0041a4 -r 733c4ee877a4 #env.sh# --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/#env.sh# Mon Jun 24 12:39:12 2013 -0400 @@ -0,0 +1,3 @@ + +export PATH=/path/to/2134123412341/tint_proteomics_scripts/:$PATH + diff -r 679a4b0041a4 -r 733c4ee877a4 dbtoolkit-4.2/lib/jargs-1.0.jar Binary file dbtoolkit-4.2/lib/jargs-1.0.jar has changed diff -r 679a4b0041a4 -r 733c4ee877a4 dbtoolkit-4.2/lib/jargs-1.0.jar~ Binary file dbtoolkit-4.2/lib/jargs-1.0.jar~ has changed diff -r 679a4b0041a4 -r 733c4ee877a4 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jun 24 12:39:12 2013 -0400 @@ -0,0 +1,48 @@ + + + + + + http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip + tar -xf SearchGUI-1.13.1_mac_and_linux.tar + cd SearchGUI-1.13.1_mac_and_linux + chmod -R o+w resources + + . + $INSTALL_DIR/ + + mkdir -p $BIN_DIR + + $INSTALL_DIR + + + + + This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool. + (https://github.com/jmchilton/peptide-shaker). + + + + + + + + http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip + chmod -R o+w resources + + . + $INSTALL_DIR/ + + mkdir -p $BIN_DIR + + $INSTALL_DIR + + + + + This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework. + (https://github.com/jmchilton/peptide-shaker). + + + +