# HG changeset patch
# User galaxyp
# Date 1379366965 14400
# Node ID d90e25c7b4925e4d6f02739069c6de4723383acb
# Parent  db6cc184146c827fbec74c7802fed9d945b5dc20
Uploaded

diff -r db6cc184146c -r d90e25c7b492 peptide_shaker.xml
--- a/peptide_shaker.xml	Fri Jul 19 11:39:19 2013 -0400
+++ b/peptide_shaker.xml	Mon Sep 16 17:29:25 2013 -0400
@@ -209,8 +209,8 @@
     <data format="tabular" name="output_psms" label="PeptideShaker PSM Report for ${on_string}" from_work_dir="psms.txt" />
   </outputs>
   <requirements>
-    <requirement type="package" version="0.20.1">PeptideShaker</requirement>
-    <requirement type="package" version="1.14.1">SearchGUI</requirement>
+    <requirement type="package" version="0.20.1">peptide_shaker</requirement>
+    <requirement type="package" version="1.14.1">searchgui</requirement>
   </requirements>
   <help>
 **What it does**
diff -r db6cc184146c -r d90e25c7b492 repository_dependencies.xml
--- a/repository_dependencies.xml	Fri Jul 19 11:39:19 2013 -0400
+++ b/repository_dependencies.xml	Mon Sep 16 17:29:25 2013 -0400
@@ -1,4 +1,6 @@
 <?xml version="1.0"?>
 <repositories description="Required proteomics dependencies.">
   <repository toolshed="http://toolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="f74290b136fc" />
+  <repository toolshed="http://toolshed.g2.bx.psu.edu" name="package_searchgui_1_14_4" owner="galaxyp" changeset_revision="67de51d52907" />
+  <repository toolshed="http://toolshed.g2.bx.psu.edu" name="package_peptideshaker_0_20_1" owner="galaxyp" changeset_revision="cfd55b6c4fa2" />
 </repositories>
diff -r db6cc184146c -r d90e25c7b492 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jul 19 11:39:19 2013 -0400
+++ b/tool_dependencies.xml	Mon Sep 16 17:29:25 2013 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="SearchGUI" version="1.14.1">
-      <repository toolshed="http://toolshed.g2.bx.psu.edu" name="searchgui" owner="galaxyp" changeset_revision="dd321c3b913a" prior_installation_required="True"/>
-    </package>    
-    <package name="PeptideShaker" version="0.20.1">
-      <repository toolshed="http://toolshed.g2.bx.psu.edu" name="peptideshaker_0201" owner="galaxyp" changeset_revision="94b151369c67" prior_installation_required="True"/>
+    <package name="searchgui" version="1.14.1">
+      <repository toolshed="http://toolshed.g2.bx.psu.edu" name="package_searchgui_1_14_4" owner="galaxyp" changeset_revision="67de51d52907" />
+    </package>
+    <package name="peptide_shaker" version="0.20.1">
+      <repository toolshed="http://toolshed.g2.bx.psu.edu" name="package_peptideshaker_0_20_1" owner="galaxyp" changeset_revision="cfd55b6c4fa2" />
     </package>
 </tool_dependency>