Mercurial > repos > galaxyp > peptideshaker
changeset 49:58a3e6cb2598 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 6e846f7195a9e939047ac975c6523e8cf99da6b4
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--- a/macros.xml Thu Sep 27 04:31:53 2018 -0400 +++ b/macros.xml Fri Oct 12 08:56:06 2018 -0400 @@ -2,12 +2,14 @@ <xml name="stdio"> <stdio> <exit_code range="1:" level="fatal" description="Job Failed" /> - <regex match="java.lang.OutOfMemoryError" level="fatal_oom" description="Java memory Exception"/> + <!-- <regex match="java.lang.OutOfMemoryError" level="fatal_oom" description="Java memory Exception"/> <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/> <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/> + <regex match="Native memory allocation (malloc) failed" level="fatal_oom" description="Java memory Exception"/>--> <regex match="java.*Exception" level="fatal" description="Java Exception"/> <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/> - <regex match="CompomicsError" level="fatal" description="Compomics Error"/> + <regex match="PeptideShaker ran out of memory" level="fatal" description="JVM Error"/> + <regex match="CompomicsError" level="fatal" description="Compomics Error"/> </stdio> </xml> <token name="@GENERAL_PARAMETERS@"> @@ -52,7 +54,8 @@ </token> <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> - <token name="@SEARCHGUI_VERSION@">3.3.3</token> + <token name="@SEARCHGUI_VERSION@">3.3.5</token> + <token name="@PEPTIDESHAKER_VERSION@">1.16.31</token> <xml name="general_options"> <section name="protein_digest_options" expanded="false" title="Protein Digestion Options">
--- a/peptide_shaker.xml Thu Sep 27 04:31:53 2018 -0400 +++ b/peptide_shaker.xml Fri Oct 12 08:56:06 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="peptide_shaker" name="Peptide Shaker" version="1.16.26"> +<tool id="peptide_shaker" name="Peptide Shaker" version="@PEPTIDESHAKER_VERSION@"> <description> Perform protein identification using various search engines based on results from SearchGUI </description> @@ -6,11 +6,12 @@ <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="1.16.26">peptide-shaker</requirement> + <requirement type="package" version="@PEPTIDESHAKER_VERSION@">peptide-shaker</requirement> </requirements> <expand macro="stdio" /> - <command> -<![CDATA[ + + <command><![CDATA[ + ## When supporting more advanced Galaxy versions: command use_shared_home="false" #from datetime import datetime #set $exp_str = "Galaxy_Experiment_%s" % datetime.now().strftime("%Y%m%d%H%M%s") #set $samp_str = "Sample_%s" % datetime.now().strftime("%Y%m%d%H%M%s") @@ -18,16 +19,33 @@ #set $bin_dir = "bin" - mkdir output_reports; - cwd=`pwd`; + mkdir output_reports && + cwd=`pwd` && + export HOME=\$cwd && + + echo "" > $temp_stderr && ln -s '$searchgui_input' searchgui_input.zip && jar xvf searchgui_input.zip SEARCHGUI_IdentificationParameters.par && + + + peptide-shaker eu.isas.peptideshaker.cmd.PathSettingsCLI + --exec_dir="\$cwd/${bin_dir}" + -temp_folder \$cwd/PathSettingsCLI + -log \$cwd/peptideshaker.log && + + #if str($exporting_options.output_reports) != "None" + #set $output_reports_list = set(str($exporting_options.output_reports).split(',')) + #else + #set $output_reports_list = set() + #end if + ###################### ## PeptideShakerCLI ## ###################### - (peptide-shaker eu.isas.peptideshaker.cmd.PeptideShakerCLI + (peptide-shaker -Djava.awt.headless=true eu.isas.peptideshaker.cmd.PeptideShakerCLI --exec_dir="\$cwd/${bin_dir}" + -gui 0 -temp_folder \$cwd/PeptideShakerCLI -experiment '$exp_str' -sample '$samp_str' @@ -35,166 +53,123 @@ -identification_files \$cwd/searchgui_input.zip -id_params \$cwd/SEARCHGUI_IdentificationParameters.par -out \$cwd/peptideshaker_output.cpsx + #if $exporting_options.zip_conditional.zip_output_boolean == 'zip': -zip \$cwd/peptideshaker_output.zip - #set $cleaned_list = str($outputs).split(',') - #if 'cps' in $cleaned_list: - #silent $cleaned_list.remove('cps') - #end if - #if 'mzidentML' in $cleaned_list: - #silent $cleaned_list.remove('mzidentML') - #end if - #if 'zip' in $cleaned_list: - #silent $cleaned_list.remove('zip') - #end if - #if len($cleaned_list) > 0 - ## Only numbers are left over. These corresponds to different reports. - -reports #echo ','.join($cleaned_list)# - #end if - + #end if -threads "\${GALAXY_SLOTS:-12}" - ##Optional processing parameters: - #if $processing_options.processing_options_selector == "yes" - -protein_fdr "${processing_options.protein_fdr}" - -peptide_fdr "${processing_options.peptide_fdr}" - -psm_fdr "${processing_options.psm_fdr}" - -ptm_score "${processing_options.ptm_score.ptm_score_selector}" - #if $processing_options.ptm_score.ptm_score_selector == 1 - -score_neutral_losses "${processing_options.ptm_score.neutral_losses}" - #if str($processing_options.ptm_score.ptm_threshold) != '' - -ptm_threshold "${processing_options.ptm_score.ptm_threshold}" - #end if + ##Optional processing parameters: + #if $processing_options.processing_options_selector == "yes" + -protein_fdr "${processing_options.protein_fdr}" + -peptide_fdr "${processing_options.peptide_fdr}" + -psm_fdr "${processing_options.psm_fdr}" + -ptm_score "${processing_options.ptm_score.ptm_score_selector}" + #if $processing_options.ptm_score.ptm_score_selector == 1 + -score_neutral_losses "${processing_options.ptm_score.neutral_losses}" + #if str($processing_options.ptm_score.ptm_threshold) != '' + -ptm_threshold "${processing_options.ptm_score.ptm_threshold}" #end if - -ptm_alignment "${processing_options.ptm_alignment}" - -ptm_sequence_matching_type "${processing_options.ptm_sequence_matching_type}" - -protein_fraction_mw_confidence "${processing_options.protein_fraction_mw_confidence}" #end if + -ptm_alignment "${processing_options.ptm_alignment}" + -ptm_sequence_matching_type "${processing_options.ptm_sequence_matching_type}" + -protein_fraction_mw_confidence "${processing_options.protein_fraction_mw_confidence}" + #end if + + ##Optional filtering parameters: + #if $filtering_options.filtering_options_selector == "yes": + -import_peptide_length_min "${filtering_options.min_peptide_length}" + -import_peptide_length_max "${filtering_options.max_peptide_length}" + -import_precurosor_mz "${filtering_options.max_precursor_error}" + -import_precurosor_mz_ppm "${filtering_options.max_precursor_error_type}" + ##-max_xtandem_e "${filtering_options.max_xtandem_e}" + ##-max_omssa_e "${filtering_options.max_omssa_e}" + ##-max_mascot_e "${filtering_options.max_mascot_e}" + -exclude_unknown_ptms "${filtering_options.exclude_unknown_ptms}" + #end if - ##Optional filtering parameters: - #if $filtering_options.filtering_options_selector == "yes": - -import_peptide_length_min "${filtering_options.min_peptide_length}" - -import_peptide_length_max "${filtering_options.max_peptide_length}" - -import_precurosor_mz "${filtering_options.max_precursor_error}" - -import_precurosor_mz_ppm "${filtering_options.max_precursor_error_type}" - ##-max_xtandem_e "${filtering_options.max_xtandem_e}" - ##-max_omssa_e "${filtering_options.max_omssa_e}" - ##-max_mascot_e "${filtering_options.max_mascot_e}" - -exclude_unknown_ptms "${filtering_options.exclude_unknown_ptms}" + ################################## + ## mzidCLI options ## + ################################## + + #if $exporting_options.mzidentml_conditional.mzidentml_creation == 1: + -output_file \$cwd/output.mzid + -include_sequences ${exporting_options.mzidentml_conditional.include_sequences} + #if $contact_options.contact_options_selector == "yes": + -contact_first_name "$contact_options.contact_first_name" + -contact_last_name "$contact_options.contact_last_name" + -contact_email "$contact_options.contact_email" + -contact_address "$contact_options.contact_address" + #if str($contact_options.contact_url).strip() != '': + -contact_url = "$contact_options.contact_url" + #end if + -organization_name "$contact_options.organization_name" + -organization_email "$contact_options.organization_email" + -organization_address "$contact_options.organization_address" + #if str($contact_options.organization_url).strip() != '': + -organization_url = "$contact_options.organization_url" + #end if + #else: + -contact_first_name "Proteomics" + -contact_last_name "Galaxy" + -contact_email "galaxyp@umn.edu" + -contact_address "galaxyp@umn.edu" + -organization_name "University of Minnesota" + -organization_email "galaxyp@umn.edu" + -organization_address "Minneapolis, MN 55455, Vereinigte Staaten" #end if - - 2>> $temp_stderr) - - && - - echo "Running Reports"; + #end if ################################## ## PeptideShaker Report options ## ################################## - - #if 'mzidentML' in str($outputs).split(','): - echo "Generating mzIdentML"; - (peptide-shaker eu.isas.peptideshaker.cmd.MzidCLI - --exec_dir="\$cwd/${bin_dir}" - -in \$cwd/peptideshaker_output.zip - -output_file \$cwd/output.mzid - #if $contact_options.contact_options_selector == "yes": - -contact_first_name "$contact_options.contact_first_name" - -contact_last_name "$contact_options.contact_last_name" - -contact_email "$contact_options.contact_email" - -contact_address "$contact_options.contact_address" - #if str($contact_options.contact_url).strip() != '': - -contact_url = "$contact_options.contact_url" - #end if - -organization_name "$contact_options.organization_name" - -organization_email "$contact_options.organization_email" - -organization_address "$contact_options.organization_address" - #if str($contact_options.organization_url).strip() != '': - -organization_url = "$contact_options.organization_url" - #end if - #else: - -contact_first_name "Proteomics" - -contact_last_name "Galaxy" - -contact_email "galaxyp@umn.edu" - -contact_address "galaxyp@umn.edu" - -organization_name "University of Minnesota" - -organization_email "galaxyp@umn.edu" - -organization_address "Minneapolis, MN 55455, Vereinigte Staaten" - #end if - 2>> $temp_stderr) - && + ## Generate Reports if the user has selected one of the 11 additional reports + #if len($output_reports_list) > 0 + -out_reports \$cwd/output_reports + -reports #echo ','.join($output_reports_list)# #end if - ## Generate Reports if the user has selected one of the 8 additional reports - ## 'cps', 'mzidentML' and 'zip' are not valid options for PeptideShaker - ## and will not be passed to the command line - #if set(["0","1","2","3","4","5","6","7"]).intersection( set( str( $outputs ).split(',') ) ): + 2>> $temp_stderr) - (peptide-shaker eu.isas.peptideshaker.cmd.ReportCLI - --exec_dir="\$cwd/${bin_dir}" - -temp_folder \$cwd/ReportCLI - -in \$cwd/peptideshaker_output.zip - -out_reports \$cwd/output_reports - #set $cleaned_list = str($outputs).split(',') - #if 'cps' in $cleaned_list: - #silent $cleaned_list.remove('cps') - #end if - #if 'mzidentML' in $cleaned_list: - #silent $cleaned_list.remove('mzidentML') - #end if - #if 'zip' in $cleaned_list: - #silent $cleaned_list.remove('zip') - #end if - ## Only numbers are left over. These corresponds to different reports. - -reports #echo ','.join($cleaned_list)# - - 2>> $temp_stderr) - && + #if len(output_reports_list)>0: + #if '0' in $output_reports_list: + && find \$cwd/output_reports -name '*Certificate_of_Analysis.txt' -exec bash -c 'mv "$0" "certificate.txt"' {} \; + #end if + #if '1' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Hierarchical_Report.txt' -exec bash -c 'mv "$0" "hierarchical.txt"' {} \; + #end if + #if '2' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_PSM_Phosphorylation_Report.txt' -exec bash -c 'mv "$0" "psm_phospho.txt"' {} \; + #end if` + #if '3' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_PSM_Report.txt' -exec bash -c 'mv "$0" "psm.txt"' {} \; + #end if + #if '4' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_PSM_Report_with_non-validated_matches.txt' -exec bash -c 'mv "$0" "psm_nonvalidated.txt"' {} \; + #end if + #if '5' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Peptide_Phosphorylation_Report.txt' -exec bash -c 'mv "$0" "peptides_phospho.txt"' {} \; + #end if + #if '6' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Peptide_Report.txt' -exec bash -c 'mv "$0" "peptides.txt"' {} \; + #end if + #if '7' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Peptide_Report_with_non-validated_matches.txt' -exec bash -c 'mv "$0" "peptides_nonvalidated.txt"' {} \; + #end if + #if '8' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Protein_Phosphorylation_Report.txt' -exec bash -c 'mv "$0" "proteins_phospho.txt"' {} \; + #end if + #if '9' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Protein_Report.txt' -exec bash -c 'mv "$0" "proteins.txt"' {} \; + #end if + #if '10' in $output_reports_list: + && find \$cwd/output_reports -name '*Default_Protein_Report_with_non-validated_matches.txt' -exec bash -c 'mv "$0" "proteins_nonvalidated.txt"' {} \; + #end if + #if '11' in $output_reports_list: + && find \$cwd/output_reports -name '*Extended_PSM_Report.txt' -exec bash -c 'mv "$0" "psmx.txt"' {} \; + #end if #end if - ## # ls -l \$cwd/output_reports/* ; - - #if '0' in str($outputs).split(','): - find \$cwd/output_reports -name '*Certificate_of_Analysis*' -exec bash -c 'mv "$0" "certificate.txt"' {} \; - ; - #end if - #if '1' in str($outputs).split(','): - find \$cwd/output_reports -name '*Hierarchical*' -exec bash -c 'mv "$0" "hierarchical.txt"' {} \; - ; - #end if - #if '2' in str($outputs).split(','): - find \$cwd/output_reports -name '*PSM_Phosphorylation_Report*' -exec bash -c 'mv "$0" "psm_phospho.txt"' {} \; - ; - #end if - #if '8' in str($outputs).split(','): - find \$cwd/output_reports -name '*Extended_PSM_Report*' -exec bash -c 'mv "$0" "psmx.txt"' {} \; - ; - #end if - #if '3' in str($outputs).split(','): - find \$cwd/output_reports -name '*PSM_Report*' -exec bash -c 'mv "$0" "psm.txt"' {} \; - ; - #end if - #if '4' in str($outputs).split(','): - find \$cwd/output_reports -name '*Peptide_Phosphorylation_Report*' -exec bash -c 'mv "$0" "peptides_phospho.txt"' {} \; - ; - #end if - #if '5' in str($outputs).split(','): - find \$cwd/output_reports -name '*Peptide_Report*' -exec bash -c 'mv "$0" "peptides.txt"' {} \; - ; - #end if - #if '6' in str($outputs).split(','): - find \$cwd/output_reports -name '*Protein_Phosphorylation_Report*' -exec bash -c 'mv "$0" "proteins_phospho.txt"' {} \; - ; - #end if - #if '7' in str($outputs).split(','): - find \$cwd/output_reports -name '*Protein_Report*' -exec bash -c 'mv "$0" "proteins.txt"' {} \; - ; - #end if - - exit_code_for_galaxy=\$?; - cat $temp_stderr 2>&1; - (exit \$exit_code_for_galaxy) - + && cat $temp_stderr 2>&1; ]]> </command> <inputs> @@ -297,60 +272,92 @@ </when> </conditional> - <param name="include_sequences" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Include the protein sequences in mzIdentML" /> - <param name="outputs" type="select" display="checkboxes" multiple="True" label="Output options"> - <option value="zip">Zip File for import to Desktop App</option> - <option value="mzidentML" selected="True">mzidentML File</option> - <option value="3">PSM Report</option> - <option value="8">Extended PSM Report</option> - <option value="2">PSM Phosphorylation Report</option> - <option value="5">Peptide Report</option> - <option value="4">Peptide Phosphorylation Report</option> - <option value="7">Protein Report</option> - <option value="6">Protein Phosphorylation Report</option> - <option value="0">Certificate of Analysis</option> - <option value="1">Hierarchical Report</option> - <option value="cps">CPS file</option> - <validator type="no_options" message="Please select at least one output file" /> - </param> + <section name="exporting_options" expanded="true" title="Exporting options"> + + <conditional name="mzidentml_conditional"> + <param name="mzidentml_creation" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Creates a mzIdentML file" /> + <when value="1"> + <param name="include_sequences" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Include the protein sequences in the mzIdentML file" /> + </when> + <when value="0" /> + </conditional> + + <conditional name="zip_conditional"> + <param name="zip_output_boolean" type="boolean" truevalue="zip" falsevalue="separate" checked="false" label="Compress results into a single zip file" /> + <when value="separate"> + <param name="export_cps" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Exports the CPS file" /> + </when> + <when value="zip" /> + </conditional> + + <param name="output_reports" type="select" display="checkboxes" multiple="True" optional="true" label="Reports to be generated"> + <option value="3">PSM Report</option> + <option value="4">PSM Report with non-validated matches</option> + <option value="2">PSM Phosphorylation Report</option> + <option value="11">Extended PSM Report</option> + <option value="6">Peptide Report</option> + <option value="7">Peptide Report with non-validated matches</option> + <option value="5">Peptide Phosphorylation Report</option> + <option value="9">Protein Report</option> + <option value="10">Protein Report with non-validated matches</option> + <option value="8">Protein Phosphorylation Report</option> + <option value="0">Certificate of Analysis</option> + <option value="1">Hierarchical Report</option> + </param> + + </section> </inputs> <outputs> <data format="mzid" name="mzidentML" from_work_dir="output.mzid" label="${tool.name} on ${on_string}: mzidentML file"> - <filter>'mzidentML' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and mzidentml_conditional['mzidentml_creation'] is True</filter> </data> <data format="peptideshaker_archive" name="output_cps" from_work_dir="peptideshaker_output.cpsx" label="${tool.name} on ${on_string}: CPS file"> - <filter>'cps' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and exporting_options['zip_conditional']['export_cps'] is True</filter> </data> <data format="zip" name="output_zip" from_work_dir="peptideshaker_output.zip" label="${tool.name} on ${on_string}: Archive"> - <filter>'zip' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is True</filter> </data> - <data format="txt" name="output_certificate" from_work_dir="certificate.txt" label="${tool.name} on ${on_string}: Parameters"> - <filter>'0' in outputs</filter> + <!-- + <data format="tabular" name="reports"> + <discover_datasets pattern="(?P<designation>.+)\.txt" format="tabular" directory="output_reports" visible="true" assign_primary_output="true" /> + </data> + --> + <data format="txt" name="output_certificate" from_work_dir="certificate.txt" label="${tool.name} on ${on_string}: Parameters"> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '0' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_hierarchical" from_work_dir="hierarchical.txt" label="${tool.name} on ${on_string}: Hierarchical Report"> - <filter>'1' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '1' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_psm_phosphorylation" from_work_dir="psm_phospho.txt" label="${tool.name} on ${on_string}: PSM Phosphorylation Report"> - <filter>'2' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '2' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_psm" from_work_dir="psm.txt" label="${tool.name} on ${on_string}: PSM Report"> - <filter>'3' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '3' in exporting_options['output_reports']</filter> + </data> + <data format="tabular" name="output_psm_nonvalidated" from_work_dir="psm_nonvalidated.txt" label="${tool.name} on ${on_string}: PSM Report with non-validated matches"> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '4' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_extended_psm" from_work_dir="psmx.txt" label="${tool.name} on ${on_string}: Extended PSM Report"> - <filter>'8' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '11' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_peptides_phosphorylation" from_work_dir="peptides_phospho.txt" label="${tool.name} on ${on_string}: Peptide Phosphorylation Report"> - <filter>'4' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '5' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_peptides" from_work_dir="peptides.txt" label="${tool.name} on ${on_string}: Peptide Report"> - <filter>'5' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '6' in exporting_options['output_reports']</filter> + </data> + <data format="tabular" name="output_peptides_nonvalidated" from_work_dir="peptides_nonvalidated.txt" label="${tool.name} on ${on_string}: Peptide Report with non-validated matches"> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '7' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_proteins_phosphorylation" from_work_dir="proteins_phospho.txt" label="${tool.name} on ${on_string}: Protein Phosphorylation Report"> - <filter>'6' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '8' in exporting_options['output_reports']</filter> </data> <data format="tabular" name="output_proteins" from_work_dir="proteins.txt" label="${tool.name} on ${on_string}: Protein Report"> - <filter>'7' in outputs</filter> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '9' in exporting_options['output_reports']</filter> + </data> + <data format="tabular" name="output_proteins_nonvalidated" from_work_dir="proteins_nonvalidated.txt" label="${tool.name} on ${on_string}: Protein Repor with non-validated matches"> + <filter>exporting_options['zip_conditional']['zip_output_boolean'] is False and str(exporting_options['output_reports']) != 'None' and '10' in exporting_options['output_reports']</filter> </data> </outputs> <tests> @@ -358,88 +365,50 @@ <param name="searchgui_input" value="tiny_searchgui_modifications_result1.zip" ftype="searchgui_archive"/> <param name="processing_options_selector" value="no"/> <param name="filtering_options_selector" value="no"/> - <param name="outputs" value="zip,3"/> + <param name="mzidentml_creation" value="0"/> + <param name="zip_output_boolean" value="zip"/> + <param name="export_cps" value="1"/> <output name="output_zip" file="peptide_shaker_modifications_result1.zip" ftype="zip" compare="sim_size" delta="3000" /> - <output name="output_psm"> - <assert_contents> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> </test> <test> <param name="searchgui_input" value="tiny_searchgui_modifications_result1.zip" ftype="searchgui_archive"/> <param name="processing_options_selector" value="no"/> <param name="filtering_options_selector" value="yes"/> <param name="min_peptide_length" value="1"/> - <param name="outputs" value="0,1,2,3,4,5,6,7"/> - <output name="output_certificate"> - <assert_contents> - <has_text text="Tolerance: 100" /> - <has_text text="Carbamidomethylation of C" /> - </assert_contents> - </output> - <output name="output_hierarchical"> - <assert_contents> - <has_text_matching expression="1.1\tcds.comp" /> - </assert_contents> - </output> - <output name="output_psm"> - <assert_contents> - <not_has_text text="Phosphosite" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> - <output name="output_psm_phosphorylation"> - <assert_contents> - <has_text text="Phosphosite" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> - <output name="output_peptides"> - <assert_contents> - <has_text text="Modification" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> - <output name="output_peptides_phosphorylation"> - <assert_contents> - <has_text text="Phosphosite" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> - <output name="output_proteins"> - <assert_contents> - <has_text text="Modification" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> - <output name="output_proteins_phosphorylation"> - <assert_contents> - <has_text text="Phosphosite" /> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> + <param name="mzidentml_creation" value="0"/> + <param name="zip_output_boolean" value="separate"/> + <param name="output_reports" value="0,1,2,3,4,5,6,7,8,9,10,11"/> + <output name="output_certificate" file="peptide_shaker_modifications_result1.output_certificate" ftype="txt" lines_diff="6"/> + <output name="output_hierarchical" file="peptide_shaker_modifications_result1.output_hierarchical" ftype="tabular"/> + <output name="output_extended_psm" file="peptide_shaker_modifications_result1.output_extended_psm" ftype="tabular"/> + <output name="output_psm" file="peptide_shaker_modifications_result1.output_psm" ftype="tabular"/> + <output name="output_psm_phosphorylation" file="peptide_shaker_modifications_result1.output_psm_phosphorylation" ftype="tabular"/> + <output name="output_psm_nonvalidated" file="peptide_shaker_modifications_result1.output_psm_nonvalidated" ftype="tabular"/> + <output name="output_peptides" file="peptide_shaker_modifications_result1.output_peptides" ftype="tabular"/> + <output name="output_peptides_phosphorylation" file="peptide_shaker_modifications_result1.output_peptides_phosphorylation" ftype="tabular"/> + <output name="output_peptides_nonvalidated" file="peptide_shaker_modifications_result1.output_peptides_nonvalidated" ftype="tabular"/> + <output name="output_proteins" file="peptide_shaker_modifications_result1.output_proteins" ftype="tabular"/> + <output name="output_proteins_phosphorylation" file="peptide_shaker_modifications_result1.output_proteins_phosphorylation" ftype="tabular"/> + <output name="output_proteins_nonvalidated" file="peptide_shaker_modifications_result1.output_proteins_nonvalidated" ftype="tabular"/> </test> <test> <param name="searchgui_input" value="tiny_searchgui_modifications_result1.zip" ftype="searchgui_archive"/> <param name="processing_options_selector" value="no"/> <param name="filtering_options_selector" value="no"/> - <param name="outputs" value="3,cps"/> + <param name="mzidentml_creation" value="0"/> + <param name="zip_output_boolean" value="separate"/> + <param name="export_cps" value="1"/> + <param name="output_reports" value="3"/> <output name="output_cps" file="peptide_shaker_modifications_result1.cpsx" ftype="peptideshaker_archive" compare="sim_size" delta="3000"/> - <output name="output_psm"> - <assert_contents> - <has_text text="cds.comp41779_c0_seq1" /> - </assert_contents> - </output> + <output name="output_psm" file="peptide_shaker_modifications_result1.output_psm" ftype="tabular"/> </test> </tests> <help> **What it does** -Runs multiple search engines (X! Tandem, OMSSA and MS-GF+) on any number of MGF peak lists using the SearchGUI application and combines the results. +PeptideShaker is a search engine for interpretation of proteomics identification results from multiple search engines, currently supporting X!Tandem, MS-GF+, MS Amanda, OMSSA, MyriMatch, Comet, Tide, Mascot, Andromeda and mzIdentML. http://compomics.github.io/projects/peptide-shaker.html -http://compomics.github.io/projects/searchgui.html ----
--- a/searchgui.xml Thu Sep 27 04:31:53 2018 -0400 +++ b/searchgui.xml Fri Oct 12 08:56:06 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@.1"> +<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@"> <description> Perform protein identification using various search engines and prepare results for input to Peptide Shaker </description> @@ -23,6 +23,8 @@ cwd=`pwd`; export HOME=\$cwd; + echo "" > $temp_stderr && + ## echo the search engines to run (single quotes important because X!Tandem) echo '$search_engines_options.engines'; echo 'DB: ${input_database.element_identifier} sequences: ${input_database.metadata.sequences}'; @@ -43,7 +45,7 @@ #### Set paths #### ########################################### echo 'Setting paths' && - searchgui eu.isas.searchgui.cmd.PathSettingsCLI + searchgui -Djava.awt.headless=true eu.isas.searchgui.cmd.PathSettingsCLI --exec_dir="\$cwd/${bin_dir}" -temp_folder \$cwd -log \$cwd/searchgui.log 2>> $temp_stderr && @@ -53,7 +55,7 @@ ########################################### #if $protein_database_options.create_decoy: echo 'Creating decoy database.' && - searchgui eu.isas.searchgui.cmd.FastaCLI + searchgui -Djava.awt.headless=true eu.isas.searchgui.cmd.FastaCLI --exec_dir="\$cwd/${bin_dir}" -in input_database.fasta -decoy 2>> $temp_stderr && @@ -66,7 +68,7 @@ ## generate IdentificationParameters for SearchGUI ## ##################################################### echo 'setting identification parameters' && - (searchgui eu.isas.searchgui.cmd.IdentificationParametersCLI + (searchgui -Djava.awt.headless=true eu.isas.searchgui.cmd.IdentificationParametersCLI --exec_dir="\$cwd/${bin_dir}" -out SEARCHGUI_IdentificationParameters.par @@ -435,9 +437,7 @@ (zip -u searchgui_out.zip searchgui.properties 2>> $temp_stderr); - exit_code_for_galaxy=\$?; cat $temp_stderr 2>&1; - (exit \$exit_code_for_galaxy) ]]> </command> <inputs> @@ -1108,8 +1108,8 @@ <param name="min_charge" value="1"/> <param name="max_charge" value="3"/> <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/> - <param name="xtandem.xtandem_advanced" value="yes"/> - <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/> + <param name="xtandem|xtandem_advanced" value="yes"/> + <param name="xtandem|xtandem_advanced|xtandem_refine_selector" value="yes"/> <output name="searchgui_results" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" /> </test> <!-- Test that search works with MSAmanda --> @@ -1124,7 +1124,6 @@ </test> <!-- Test that specifying non-default search engines works using modifications --> - <!-- <test> <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/> <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/> @@ -1134,13 +1133,11 @@ <param name="min_charge" value="1"/> <param name="max_charge" value="3"/> <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/> - <param name="xtandem.xtandem_advanced" value="yes"/> - <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/> - <output name="output" file="tiny_searchgui_modifications_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" /> + <param name="xtandem|xtandem_advanced" value="yes"/> + <param name="xtandem|xtandem_advanced|xtandem_refine_selector" value="yes"/> + <output name="searchgui_results" file="tiny_searchgui_modifications_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" /> </test> - --> <!-- Test that search works with MSAmanda - with modifications --> - <!-- <test> <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/> <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/> @@ -1150,9 +1147,8 @@ <param name="min_charge" value="1"/> <param name="max_charge" value="3"/> <param name="engines" value="MS_Amanda"/> - <output name="output" file="tiny_searchgui_modifications_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="5000" /> + <output name="searchgui_results" file="tiny_searchgui_modifications_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="5000" /> </test> - --> </tests> <help> **What it does**
--- a/test-data/peptide_shaker_certificate_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,68 +0,0 @@ -Project Details1: PeptideShaker Version: 0.37.4-beta -2: Date: Sat Feb 14 20:04:49 CET 2015 -3: Experiment: Galaxy_Experiment_2015021420041423940686 -4: Sample: Sample_2015021420041423940686 -5: Replicate Number: 1 -6: Identification Algorithms: X!Tandem and MS-GF+ -Database Search Parameters - -1: Precursor Accuracy Unit: ppm -2: Precursor Ion m/z Tolerance: 100.0 -3: Fragment Ion m/z Tolerance: 0.5 -4: Enzyme: Trypsin -5: Number of Missed Cleavages: Not implemented -6: Database: input_database.fasta -7: Forward Ion: b -8: Rewind Ion: y -9: Fixed Modifications: carbamidomethyl c -10: Variable Modifications: oxidation of m, acetylation of protein n-term, pyro-cmc, pyro-glu from n-term e, pyro-glu from n-term q -11: Refinement Variable Modifications: -12: Refinement Fixed Modifications: -Input Filters - -1: Minimal Peptide Length: 1 -2: Maximal Peptide Length: 30 -3: Precursor m/z Tolerance: 10.0 -4: Precursor m/z Tolerance Unit: Yes -5: Unrecognized Modifications Discarded: No -Validation Summary - -1: #Validated Proteins: 0.0 -2: Protein Total: 0.0 -3Protein FDR Limit: 1.0 % -4: Protein FNR Limit: 0.0 % -5: Protein Confidence Limit: -1.0 % -6: Protein PEP Limit: 101.0 % -7: Protein Confidence Accuracy: 0.0 % -8: #Validated Peptides: 0.0 -9: Peptide Total: 0.0 -10: Peptide FDR Limit: 1.0 % -11: Peptide FNR Limit: 0.0 % -12: Peptide Confidence Limit: -1.0 % -13: Peptide PEP Limit: 101.0 % -14: Peptide Confidence Accuracy: 0.0 % -15: #Validated PSM: 0.0 -16: PSM Total: 0.0 -17: PSM FDR Limit: 1.0 % -18: PSM FNR Limit: 0.0 % -19: PSM Confidence Limit: -1.0 % -20: PSM PEP Limit: 101.0 % -21: PSM Confidence Accuracy: 0.0 % -Postranslational Modification Scoring Settings - -1: A-score: No -2: Accounting for Neutral Losses: No -3: False Location Rate: 1.0 -Spectrum Counting Parameters - -1: Method: NSAF -2: Validated Matches Only: Yes -Annotation Settings - -1: Intensity Limit: 0.75 -2: Automatic Annotation: Yes -3: Selected Ions: b, y -4: Neutral Losses: NH3, H2O -5: Neutral Losses Sequence Dependence: Yes -6: Selected Charges: 1, 2 -7: Fragment Ion m/z Tolerance: 0.5
--- a/test-data/peptide_shaker_certificate_result2.txt Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,68 +0,0 @@ -Project Details1: PeptideShaker Version: 1.13.6 -2: Date: Fri Jan 13 11:06:50 CST 2017 -3: Experiment: Galaxy_Experiment_2017011311051484327131 -4: Sample: Sample_2017011311051484327131 -5: Replicate Number: 1 -6: Identification Algorithms: OMSSA, X!Tandem, MS-GF+, Comet and MyriMatch -Database Search Parameters - -1: Precursor Tolerance Unit: ppm -2: Precursor Ion m/z Tolerance: 100.0 -3: Fragment Ion Tolerance Unit: Da -4: Fragment Ion m/z Tolerance: 0.5 -5: Enzyme: Trypsin -6: Maximum Missed Cleavages: 2 -7: Database: input_database.fasta -8: Forward Ion: b -9: Rewind Ion: y -10: Fixed Modifications: Carbamidomethylation of C -11: Variable Modifications: Oxidation of M, Acetylation of protein N-term, Pyrolidone from E, Pyrolidone from Q, Pyrolidone from carbamidomethylated C -12: Refinement Variable Modifications: -13: Refinement Fixed Modifications: -Input Filters - -1: Minimal Peptide Length: 1 -2: Maximal Peptide Length: 30 -3: Precursor m/z Tolerance: 10.0 -4: Precursor m/z Tolerance Unit: Yes -5: Unrecognized Modifications Discarded: Yes -Validation Summary - -1: Proteins: #Validated: 2.0 -2: Proteins: Total Possible TP: 2.0 -3: Proteins: FDR Limit [%]: 0.0 -4: Proteins: FNR Limit [%]: 0.0 -5: Proteins: Confidence Limit [%]: 100.0 -6: Proteins: PEP Limit [%]: 0.0 -7: Proteins: Confidence Accuracy [%]: 0.0 -8: Peptides: #Validated: 16.0 -9: Peptides: Total Possible TP: 16.0 -10: Peptides: FDR Limit [%]: 0.0 -11: Peptides: FNR Limit [%]: 0.0 -12: Peptides: Confidence Limit [%]: 100.0 -13: Peptides: PEP Limit [%]: 0.0 -14: Peptides: Confidence Accuracy [%]: 0.0 -15: PSMs: #Validated PSM: 42.0 -16: PSMs: Total Possible TP: 42.0 -17: PSMs: FDR Limit [%]: 0.0 -18: PSMs: FNR Limit [%]: 0.0 -19: PSMs: Confidence Limit [%]: 100.0 -20: PSMs: PEP Limit [%]: 0.0 -21: PSMs: Confidence Accuracy [%]: 0.0 -PTM Scoring Settings - -1: Probabilistic Score: PhosphoRS -2: Accounting for Neutral Losses: No -3: Threshold: 95.0 -Spectrum Counting Parameters - -1: Method: NSAF -2: Validated Matches Only: No -Annotation Settings - -1: Intensity Limit: 0.75 -2: Automatic Annotation: Yes -3: Selected Ions: y, b -4: Neutral Losses: H2O, NH3, CH4OS -5: Neutral Losses Sequence Dependence: Yes -6: Fragment Ion m/z Tolerance: 0.5
--- a/test-data/peptide_shaker_hierarchical_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,79 +0,0 @@ - Main Accession Description MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting NSAF Confidently Localized Modification Sites # Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated PSMs #PSMs Confidence [%] Decoy Validation -1 cds.comp41779_c0_seq1 m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 0.017651472642866785 Related Proteins cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 15 15 15 40 40 100.0 0 Doubtful - Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Decoy Validation -1.1 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 4 4 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.1.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 0 100.0 Doubtful -1.1.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 0 100.0 Doubtful -1.1.3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 0 100.0 Doubtful -1.1.4 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 0 100.0 Doubtful -1.2 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 4 4 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.2.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 0 100.0 Doubtful -1.2.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 0 100.0 Doubtful -1.2.3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 0 100.0 Doubtful -1.2.4 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 0 100.0 Doubtful -1.3 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.3.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 0 100.0 Doubtful -1.3.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 0 100.0 Doubtful -1.4 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.4.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 0 100.0 Doubtful -1.4.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 0 100.0 Doubtful -1.5 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.5.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 0 100.0 Doubtful -1.5.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 0 100.0 Doubtful -1.6 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.6.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 0 100.0 Doubtful -1.6.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 0 100.0 Doubtful -1.7 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 4 4 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.7.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful -1.7.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 0 100.0 Doubtful -1.7.3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 0 100.0 Doubtful -1.7.4 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful -1.8 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.8.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful -1.8.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful -1.9 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.9.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful -1.9.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful -1.10 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 4 4 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.10.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 0 100.0 Doubtful -1.10.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 0 100.0 Doubtful -1.10.3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful -1.10.4 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful -1.11 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.11.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 0 100.0 Doubtful -1.11.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 0 100.0 Doubtful -1.12 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.12.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 0 100.0 Doubtful -1.12.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 0 100.0 Doubtful -1.13 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.13.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 0 100.0 Doubtful -1.13.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 0 100.0 Doubtful -1.14 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.14.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 0 100.0 Doubtful -1.14.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 0 100.0 Doubtful -1.15 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 4 4 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1.15.1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 0 100.0 Doubtful -1.15.2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful -1.15.3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 0 100.0 Doubtful -1.15.4 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful -2 cds.comp52727_c0_seq1 m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 0.0032520325203252032 Related Proteins cds.comp52727_c0_seq2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 1 1 1 2 2 100.0 0 Doubtful - Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Decoy Validation -2.1 cds.comp52727_c0_seq1; cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 2 2 100.0 0 Doubtful - Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -2.1.1 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 0 100.0 Doubtful -2.1.2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 0 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_certificate Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,79 @@ + +Project Details + +1: PeptideShaker Version: 1.16.31 +2: Date: Thu Oct 11 10:41:54 CEST 2018 +3: Experiment: Galaxy_Experiment_2018101110411539247311 +4: Sample: Sample_2018101110411539247311 +5: Replicate Number: 1 +6: Identification Algorithms: OMSSA, X!Tandem, MS-GF+ and Comet + +Database Search Parameters + +1: Precursor Tolerance Unit: ppm +2: Precursor Ion m/z Tolerance: 100.0 +3: Fragment Ion Tolerance Unit: Da +4: Fragment Ion m/z Tolerance: 0.5 +5: Cleavage: Enzyme +6: Enzyme: Trypsin +7: Missed Cleavages: 2 +8: Specificity: Specific +9: Database: input_database.fasta +10: Forward Ion: b +11: Rewind Ion: y +12: Fixed Modifications: Carbamidomethylation of C +13: Variable Modifications: Oxidation of M +14: Refinement Variable Modifications: Acetylation of protein N-term, Pyrolidone from E, Pyrolidone from Q, Pyrolidone from carbamidomethylated C +15: Refinement Fixed Modifications: + +Input Filters + +1: Minimal Peptide Length: 1 +2: Maximal Peptide Length: 30 +3: Precursor m/z Tolerance: 10.0 +4: Precursor m/z Tolerance Unit: Yes +5: Unrecognized Modifications Discarded: Yes + +Validation Summary + +1: Proteins: #Validated: 2.0 +2: Proteins: Total Possible TP: 2.0 +3: Proteins: FDR Limit [%]: 0.0 +4: Proteins: FNR Limit [%]: 0.0 +5: Proteins: Confidence Limit [%]: 100.0 +6: Proteins: PEP Limit [%]: 0.0 +7: Proteins: Confidence Accuracy [%]: 0.0 +8: Peptides: #Validated: 16.0 +9: Peptides: Total Possible TP: 16.0 +10: Peptides: FDR Limit [%]: 0.0 +11: Peptides: FNR Limit [%]: 0.0 +12: Peptides: Confidence Limit [%]: 100.0 +13: Peptides: PEP Limit [%]: 0.0 +14: Peptides: Confidence Accuracy [%]: 0.0 +15: PSMs: #Validated PSM: 42.0 +16: PSMs: Total Possible TP: 42.0 +17: PSMs: FDR Limit [%]: 0.0 +18: PSMs: FNR Limit [%]: 0.0 +19: PSMs: Confidence Limit [%]: 100.0 +20: PSMs: PEP Limit [%]: 0.0 +21: PSMs: Confidence Accuracy [%]: 0.0 + +PTM Scoring Settings + +1: Probabilistic Score: PhosphoRS +2: Accounting for Neutral Losses: No +3: Threshold: 95.0 + +Spectrum Counting Parameters + +1: Method: NSAF +2: Validated Matches Only: No + +Annotation Settings + +1: Intensity Limit: 0.75 +2: Automatic Annotation: Yes +3: Selected Ions: b, y +4: Neutral Losses: H2O, NH3, CH4OS +5: Neutral Losses Sequence Dependence: Yes +6: Fragment Ion m/z Tolerance: 0.5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_extended_psm Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,43 @@ + Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 0 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 0 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 0 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 0 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 0 100.0 Doubtful +6 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 0 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 0 100.0 Doubtful +8 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 0 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 0 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 0 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 0 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful +14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 0 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful +17 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 0 100.0 Doubtful +18 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful +19 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 0 100.0 Doubtful +20 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 0 100.0 Doubtful +21 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 0 100.0 Doubtful +22 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 0 100.0 Doubtful +23 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful +24 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 0 100.0 Doubtful +25 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 0 100.0 Doubtful +26 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful +27 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 0 100.0 Doubtful +28 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful +29 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 0 100.0 Doubtful +30 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 0 100.0 Doubtful +31 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 0 100.0 Doubtful +32 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful +33 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful +34 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 0 100.0 Doubtful +35 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 0 100.0 Doubtful +36 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 0 100.0 Doubtful +37 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 0 100.0 Doubtful +38 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 0 100.0 Doubtful +39 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 0 100.0 Doubtful +40 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 0 100.0 Doubtful +41 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 0 100.0 Doubtful +42 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 0 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_hierarchical Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,79 @@ + Main Accession Description MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting NSAF Confidently Localized Modification Sites # Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated PSMs #PSMs Confidence [%] Decoy Validation +1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 0.0032520325203252032 Related Proteins cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 1 1 1 2 2 100.0 0 Doubtful + Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Decoy Validation +1.1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +1.1.1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 0 100.0 Doubtful +1.1.2 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 0 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 0.017651472642866785 Related Proteins cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 15 15 15 40 40 100.0 0 Doubtful + Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Decoy Validation +2.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 4 4 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.1.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 0 100.0 Doubtful +2.1.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 0 100.0 Doubtful +2.1.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 0 100.0 Doubtful +2.1.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 0 100.0 Doubtful +2.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 4 4 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.2.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 0 100.0 Doubtful +2.2.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 0 100.0 Doubtful +2.2.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 0 100.0 Doubtful +2.2.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 0 100.0 Doubtful +2.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.3.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 0 100.0 Doubtful +2.3.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 0 100.0 Doubtful +2.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.4.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 0 100.0 Doubtful +2.4.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 0 100.0 Doubtful +2.5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.5.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 0 100.0 Doubtful +2.5.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 0 100.0 Doubtful +2.6 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.6.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 0 100.0 Doubtful +2.6.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 0 100.0 Doubtful +2.7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 4 4 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.7.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful +2.7.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 0 100.0 Doubtful +2.7.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 0 100.0 Doubtful +2.7.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 0 100.0 Doubtful +2.8 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.8.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful +2.8.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 0 100.0 Doubtful +2.9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.9.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful +2.9.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 0 100.0 Doubtful +2.10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 4 4 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.10.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 0 100.0 Doubtful +2.10.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 0 100.0 Doubtful +2.10.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful +2.10.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 0 100.0 Doubtful +2.11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.11.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 0 100.0 Doubtful +2.11.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 0 100.0 Doubtful +2.12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.12.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 0 100.0 Doubtful +2.12.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 0 100.0 Doubtful +2.13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.13.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 0 100.0 Doubtful +2.13.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 0 100.0 Doubtful +2.14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 2 2 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.14.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 0 100.0 Doubtful +2.14.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 0 100.0 Doubtful +2.15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 4 4 100.0 0 Doubtful + Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +2.15.1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 0 100.0 Doubtful +2.15.2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful +2.15.3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 0 100.0 Doubtful +2.15.4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 0 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_peptides Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,17 @@ + Protein(s) Protein Group(s) #Validated Protein Group(s) Unique Database Sequence Modified Sequence Position AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH 511; 504; 29 SK; SK; SK SK; SK; SK 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 YESQLSQIR NH2-YESQLSQIR-COOH 323; 323 AR; AR QS; QS 2 2 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH 37; 37 RR; RR AS; AS 2 2 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH 128; 128 RR; RR NL; NL 2 2 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH 161; 161 LK; LK IN; IN 2 2 100.0 Doubtful +6 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH 442; 442 NR; NR SE; SE 4 4 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH 63; 63 GR; GR DM; DM 2 2 100.0 Doubtful +8 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LISATSISPEHK NH2-LISATSISPEHK-COOH 549; 542; 67 DR; DR; DR ID; ID; ID 4 4 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH 403; 403 NK; NK LS; LS 4 4 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH 147; 147 AK; AK IS; IS 4 4 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SLQAENEQLR NH2-SLQAENEQLR-COOH 110; 110 VR; VR LK; LK 2 2 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH 590; 583; 108 AK; AK; AK NS; NS; NS 2 2 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 MEIITITNQLQR NH2-MEIITITNQLQR-COOH 373; 373 MK; MK SN; SN 2 2 100.0 Doubtful +14 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 (Doubtful) 1 1 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH 298; 298 MR; MR YQ; YQ 2 2 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH 254; 254 QK; QK SV; SV 4 4 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH 179; 179 AR; AR LI; LI 2 2 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_peptides_nonvalidated Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,17 @@ + Protein(s) Protein Group(s) #Validated Protein Group(s) Unique Database Sequence Modified Sequence Position AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH 511; 504; 29 SK; SK; SK SK; SK; SK 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 YESQLSQIR NH2-YESQLSQIR-COOH 323; 323 AR; AR QS; QS 2 2 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH 37; 37 RR; RR AS; AS 2 2 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH 128; 128 RR; RR NL; NL 2 2 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH 161; 161 LK; LK IN; IN 2 2 100.0 Doubtful +6 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH 442; 442 NR; NR SE; SE 4 4 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH 63; 63 GR; GR DM; DM 2 2 100.0 Doubtful +8 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LISATSISPEHK NH2-LISATSISPEHK-COOH 549; 542; 67 DR; DR; DR ID; ID; ID 4 4 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH 403; 403 NK; NK LS; LS 4 4 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH 147; 147 AK; AK IS; IS 4 4 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SLQAENEQLR NH2-SLQAENEQLR-COOH 110; 110 VR; VR LK; LK 2 2 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH 590; 583; 108 AK; AK; AK NS; NS; NS 2 2 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 MEIITITNQLQR NH2-MEIITITNQLQR-COOH 373; 373 MK; MK SN; SN 2 2 100.0 Doubtful +14 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 (Doubtful) 1 1 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH 298; 298 MR; MR YQ; YQ 2 2 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH 254; 254 QK; QK SV; SV 4 4 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH 179; 179 AR; AR LI; LI 2 2 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_peptides_phosphorylation Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,17 @@ + Protein(s) Protein Group(s) #Validated Protein Group(s) Unique Database Sequence Modified Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH SK; SK; SK SK; SK; SK 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 YESQLSQIR NH2-YESQLSQIR-COOH AR; AR QS; QS 2 2 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH RR; RR AS; AS 2 2 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH RR; RR NL; NL 2 2 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH LK; LK IN; IN 2 2 100.0 Doubtful +6 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH NR; NR SE; SE 4 4 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH GR; GR DM; DM 2 2 100.0 Doubtful +8 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LISATSISPEHK NH2-LISATSISPEHK-COOH DR; DR; DR ID; ID; ID 4 4 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH NK; NK LS; LS 4 4 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH AK; AK IS; IS 4 4 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 SLQAENEQLR NH2-SLQAENEQLR-COOH VR; VR LK; LK 2 2 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH AK; AK; AK NS; NS; NS 2 2 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 MEIITITNQLQR NH2-MEIITITNQLQR-COOH MK; MK SN; SN 2 2 100.0 Doubtful +14 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 (Doubtful) 1 1 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH MR; MR YQ; YQ 2 2 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH QK; QK SV; SV 4 4 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful) 1 1 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH AR; AR LI; LI 2 2 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_proteins Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,3 @@ + Main Accession Description Gene Name Chromosome MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting Confidently Localized Modification Sites # Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated Unique #Unique to Group #Validated Unique to Group #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 4451.587393160344 Related Proteins cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 1 1 1 1 1 1 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 24162.449974467898 Related Proteins cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 15 15 15 15 15 15 40 40 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_proteins_nonvalidated Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,3 @@ + Main Accession Description Gene Name Chromosome MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting Confidently Localized Modification Sites # Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated Unique #Unique to Group #Validated Unique to Group #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 4451.587393160344 Related Proteins cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 1 1 1 1 1 1 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 24162.449974467898 Related Proteins cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 15 15 15 15 15 15 40 40 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_proteins_phosphorylation Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,3 @@ + Main Accession Description Gene Name Chromosome MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting NSAF Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated Unique #Unique to Group #Validated Unique to Group #Validated PSMs #PSMs Confidence [%] Validation +1 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 0.0032520325203252032 0 0 Related Proteins cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 1 1 1 1 1 1 2 2 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 0.017651472642866785 0 0 Related Proteins cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 15 15 15 15 15 15 40 40 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_psm Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,43 @@ + Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +6 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +8 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +17 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +18 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +19 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +20 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +21 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +22 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +23 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +24 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +25 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +26 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +27 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +28 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +29 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +30 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +31 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +32 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +33 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +34 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +35 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +36 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +37 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +38 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +39 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +40 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +41 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful +42 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_psm_nonvalidated Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,43 @@ + Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +6 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +8 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +17 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +18 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +19 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +20 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +21 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +22 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +23 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +24 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +25 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +26 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +27 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +28 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +29 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +30 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +31 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +32 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +33 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +34 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +35 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +36 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +37 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +38 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +39 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +40 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +41 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful +42 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/peptide_shaker_modifications_result1.output_psm_phosphorylation Fri Oct 12 08:56:06 2018 -0400 @@ -0,0 +1,43 @@ + Protein(s) Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites Confidence [%] Validation +1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +3 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +6 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +8 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.14449845571 0 6.2066377342036665 100.0 Doubtful +9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983401739305 100.0 Doubtful +16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +17 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486903 0 -9.522902824571501 100.0 Doubtful +18 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful +19 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +20 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +21 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.91079757128 0 1.643983659206309 100.0 Doubtful +22 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +23 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful +24 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486903 0 -6.678955564950069 100.0 Doubtful +25 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.0560840995904 0 5.225020941769318 100.0 Doubtful +26 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +27 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564503 0 -2.731669916283406 100.0 Doubtful +28 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful +29 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +30 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.224205328391 0 2.5264056584343257 100.0 Doubtful +31 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.0560840995904 0 5.228649666852938 100.0 Doubtful +32 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful +33 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful +34 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.481004205034201 100.0 Doubtful +35 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127983906467 100.0 Doubtful +36 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.2324313291878943 100.0 Doubtful +37 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +38 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.0583092202605 0 -1.1628605151025897 100.0 Doubtful +39 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.063410823544894 100.0 Doubtful +40 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146706 0 -1.7720894394949223 100.0 Doubtful +41 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful +42 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.113546101111509 100.0 Doubtful
--- a/test-data/peptide_shaker_peptides_phoshorylation_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ - Protein(s) Protein Group(s) #Validated Protein Group(s) Unique Database Sequence Modified Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites #Validated PSMs #PSMs Confidence [%] Validation -1 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH SK; SK; SK SK; SK; SK 2 2 100.0 Doubtful -2 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 YESQLSQIR NH2-YESQLSQIR-COOH AR; AR QS; QS 2 2 100.0 Doubtful -3 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH RR; RR AS; AS 2 2 100.0 Doubtful -4 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH RR; RR NL; NL 2 2 100.0 Doubtful -5 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH LK; LK IN; IN 2 2 100.0 Doubtful -6 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH NR; NR SE; SE 4 4 100.0 Doubtful -7 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH GR; GR DM; DM 2 2 100.0 Doubtful -8 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 LISATSISPEHK NH2-LISATSISPEHK-COOH DR; DR; DR ID; ID; ID 4 4 100.0 Doubtful -9 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH NK; NK LS; LS 4 4 100.0 Doubtful -10 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH AK; AK IS; IS 4 4 100.0 Doubtful -11 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SLQAENEQLR NH2-SLQAENEQLR-COOH VR; VR LK; LK 2 2 100.0 Doubtful -12 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH AK; AK; AK NS; NS; NS 2 2 100.0 Doubtful -13 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 MEIITITNQLQR NH2-MEIITITNQLQR-COOH MK; MK SN; SN 2 2 100.0 Doubtful -14 cds.comp52727_c0_seq1; cds.comp52727_c0_seq2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 (Doubtful) 1 1 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH MR; MR YQ; YQ 2 2 100.0 Doubtful -15 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH QK; QK SV; SV 4 4 100.0 Doubtful -16 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH AR; AR LI; LI 2 2 100.0 Doubtful
--- a/test-data/peptide_shaker_peptides_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ - Protein(s) Protein Group(s) #Validated Protein Group(s) Unique Database Sequence Modified Sequence Position AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence [%] Validation -1 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH 511; 504; 29 SK; SK; SK SK; SK; SK 2 2 100.0 Doubtful -2 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 YESQLSQIR NH2-YESQLSQIR-COOH 323; 323 AR; AR QS; QS 2 2 100.0 Doubtful -3 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH 37; 37 RR; RR AS; AS 2 2 100.0 Doubtful -4 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH 128; 128 RR; RR NL; NL 2 2 100.0 Doubtful -5 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH 161; 161 LK; LK IN; IN 2 2 100.0 Doubtful -6 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH 442; 442 NR; NR SE; SE 4 4 100.0 Doubtful -7 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH 63; 63 GR; GR DM; DM 2 2 100.0 Doubtful -8 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 LISATSISPEHK NH2-LISATSISPEHK-COOH 549; 542; 67 DR; DR; DR ID; ID; ID 4 4 100.0 Doubtful -9 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH 403; 403 NK; NK LS; LS 4 4 100.0 Doubtful -10 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH 147; 147 AK; AK IS; IS 4 4 100.0 Doubtful -11 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 SLQAENEQLR NH2-SLQAENEQLR-COOH 110; 110 VR; VR LK; LK 2 2 100.0 Doubtful -12 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH 590; 583; 108 AK; AK; AK NS; NS; NS 2 2 100.0 Doubtful -13 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 MEIITITNQLQR NH2-MEIITITNQLQR-COOH 373; 373 MK; MK SN; SN 2 2 100.0 Doubtful -14 cds.comp52727_c0_seq1; cds.comp52727_c0_seq2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 (Doubtful) 1 1 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH 298; 298 MR; MR YQ; YQ 2 2 100.0 Doubtful -15 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH 254; 254 QK; QK SV; SV 4 4 100.0 Doubtful -16 cds.comp41779_c0_seq1; cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful) 1 1 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH 179; 179 AR; AR LI; LI 2 2 100.0 Doubtful
--- a/test-data/peptide_shaker_peptides_result3.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ - Protein(s) Sequence Modified Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #Validated PSMs #PSMs Confidence Decoy Validation -1 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 NLLLDANKENGELK NH2-NLLLDANKENGELK-COOH AK; AK IS; IS 4 4 100.0 0 Doubtful -2 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISTGYITENIGGFR NH2-ISTGYITENIGGFR-COOH NR; NR SE; SE 4 4 100.0 0 Doubtful -3 cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 EIRDEYDNQLNLLSADLESK NH2-EIRDEYDNQLNLLSADLESK-COOH MR; MR YQ; YQ 2 2 100.0 0 Doubtful -4 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 INEDRIDELQDKVNK NH2-INEDRIDELQDKVNK-COOH AR; AR LI; LI 2 2 100.0 0 Doubtful -5 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SHVVGAGLGGGSMGSMNQSMSLHGGR NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH RR; RR AS; AS 2 2 100.0 0 Doubtful -6 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 LISATSISPEHK NH2-LISATSISPEHK-COOH DR; DR; DR ID; ID; ID 4 4 100.0 0 Doubtful -7 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ISITTYEEEIEDLHATAR NH2-ISITTYEEEIEDLHATAR-COOH LK; LK IN; IN 2 2 100.0 0 Doubtful -8 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 VGNLEEELEFLR NH2-VGNLEEELEFLR-COOH QK; QK SV; SV 4 4 100.0 0 Doubtful -9 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 SVISIGEVESEGQYVTLENTSSGR NH2-SVISIGEVESEGQYVTLENTSSGR-COOH SK; SK; SK SK; SK; SK 2 2 100.0 0 Doubtful -10 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 SLQAENEQLR NH2-SLQAENEQLR-COOH VR; VR LK; LK 2 2 100.0 0 Doubtful -11 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 LHVEMESMIEELQMLMDAK NH2-LHVEMESMIEELQMLMDAK-COOH NK; NK LS; LS 4 4 100.0 0 Doubtful -12 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10 KGDIIATVDEWGPVNR NH2-KGDIIATVDEWGPVNR-COOH AK; AK; AK NS; NS; NS 2 2 100.0 0 Doubtful -13 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 EFDVEPLKEAYQAEIDEAK NH2-EFDVEPLKEAYQAEIDEAK-COOH RR; RR NL; NL 2 2 100.0 0 Doubtful -14 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 ASLGMAAGVAGGIATK NH2-ASLGMAAGVAGGIATK-COOH GR; GR DM; DM 2 2 100.0 0 Doubtful -15 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 YESQLSQIR NH2-YESQLSQIR-COOH AR; AR QS; QS 2 2 100.0 0 Doubtful -16 cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 MEIITITNQLQR NH2-MEIITITNQLQR-COOH MK; MK SN; SN 2 2 100.0 0 Doubtful
--- a/test-data/peptide_shaker_proteins_phoshorylation_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ - Main Accession Description Gene Name Chromosome MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting NSAF Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated Unique #Unique to Group #Validated Unique to Group #Validated PSMs #PSMs Confidence [%] Validation -1 cds.comp41779_c0_seq1 m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 0.017651472642866785 0 0 Related Proteins cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 15 15 15 15 15 15 40 40 100.0 Doubtful -2 cds.comp52727_c0_seq1 m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 0.0032520325203252032 0 0 Related Proteins cds.comp52727_c0_seq2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 1 1 1 1 1 1 2 2 100.0 Doubtful
--- a/test-data/peptide_shaker_proteins_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ - Main Accession Description Gene Name Chromosome MW [kDa] Possible Coverage [%] Coverage [%] Spectrum Counting Confidently Localized Modification Sites # Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Protein Inference Secondary Accessions Protein Group #Validated Peptides #Peptides #Unique #Validated Unique #Unique to Group #Validated Unique to Group #Validated PSMs #PSMs Confidence [%] Validation -1 cds.comp41779_c0_seq1 m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 69.88215380565927 92.52 37.58 24162.449974467898 Related Proteins cds.comp41779_c0_seq2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 15 15 15 15 15 15 40 40 100.0 Doubtful -2 cds.comp52727_c0_seq1 m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91 69.96963713242043 100.0 3.25 4451.587393160344 Related Proteins cds.comp52727_c0_seq2 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 1 1 1 1 1 1 2 2 100.0 Doubtful
--- a/test-data/peptide_shaker_psm_phoshorylation_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,43 +0,0 @@ - Protein(s) Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confident Phosphosites #Confident Phosphosites Ambiguous Phosphosites #Ambiguous Phosphosites Confidence [%] Validation -1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -4 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -5 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -6 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -7 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -8 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -9 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -10 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -11 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -12 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -13 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -14 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -15 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -16 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -17 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -18 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -19 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -20 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -21 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -22 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -23 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -24 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -25 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -26 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -27 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -28 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -29 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -30 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -31 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -32 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -33 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -34 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -35 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful -36 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -37 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -38 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -39 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -40 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -41 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -42 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful
--- a/test-data/peptide_shaker_psm_result1.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,43 +0,0 @@ - Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -4 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -5 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -6 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -7 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -8 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -9 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -10 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -11 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -12 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -13 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -14 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -15 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -16 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -17 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -18 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -19 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -20 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -21 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -22 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -23 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -24 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -25 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -26 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -27 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -28 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -29 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -30 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -31 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -32 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -33 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -34 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -35 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful -36 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -37 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -38 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -39 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -40 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -41 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -42 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful
--- a/test-data/peptide_shaker_psm_result2.tabular Thu Sep 27 04:31:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,43 +0,0 @@ - Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation -1 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, +MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -2 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -3 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -4 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, +MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -5 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1198, MSn(1139.0413), 115.6 min -1.0 1139.04127 2+ 2+ 2276.05608409959 0 5.225020941968939 100.0 Doubtful -6 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 MEIITITNQLQR MK; MK SN; SN 373; 373 NH2-MEIITITNQLQR-COOH searchgui_tinyspectra1.mgf Cmpd 636, +MSn(730.3981), 66.9 min -1.0 730.39814 2+ 2+ 1458.7864490053003 0 -3.232431329032245 100.0 Doubtful -7 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 207, +MSn(785.9179), 35.7 min -1.0 785.91791 2+ 2+ 1569.8362356486905 0 -9.522902824571501 100.0 Doubtful -8 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -9 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -10 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -11 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, +MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -12 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 EFDVEPLKEAYQAEIDEAK RR; RR NL; NL 128; 128 NH2-EFDVEPLKEAYQAEIDEAK-COOH searchgui_tinyspectra1.mgf Cmpd 736, +MSn(742.0258), 75.1 min -1.0 742.02585 3+ 3+ 2223.05830922026 0 -1.1628605149493787 100.0 Doubtful -13 cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 EIRDEYDNQLNLLSADLESK MR; MR YQ; YQ 298; 298 NH2-EIRDEYDNQLNLLSADLESK-COOH searchgui_tinyspectra1.mgf Cmpd 748, MSn(789.0604), 76.1 min -1.0 789.06034 3+ 3+ 2364.1444984557097 0 6.206637734347747 100.0 Doubtful -14 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -15 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 875, MSn(483.2538), 89.2 min -1.0 483.25374 3+ 3+ 1446.7354589782603 0 2.711916908512312 100.0 Doubtful -16 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 INEDRIDELQDKVNK AR; AR LI; LI 179; 179 NH2-INEDRIDELQDKVNK-COOH searchgui_tinyspectra1.mgf Cmpd 81, +MSn(610.3171), 27.0 min -1.0 610.31708 3+ 3+ 1827.9326552146704 0 -1.7720894394949223 100.0 Doubtful -17 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -18 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -19 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -20 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -21 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -22 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SHVVGAGLGGGSMGSMNQSMSLHGGR RR; RR AS; AS 37; 37 NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH searchgui_tinyspectra1.mgf Cmpd 220, +MSn(824.3852), 36.3 min -1.0 824.38516 3+ 3+ 2470.1263804604496 0 2.939629370057349 100.0 Doubtful -23 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -24 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -25 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, +MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -26 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 75, +MSn(641.8547), 26.7 min -1.0 641.85466 2+ 2+ 1281.6928658902905 0 1.4810042052113237 100.0 Doubtful -27 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -28 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -29 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 YESQLSQIR AR; AR QS; QS 323; 323 NH2-YESQLSQIR-COOH searchgui_tinyspectra1.mgf Cmpd 67, +MSn(562.2947), 26.3 min -1.0 562.29468 2+ 2+ 1122.5669371011802 0 6.998127984108653 100.0 Doubtful -30 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 VGNLEEELEFLR QK; QK SV; SV 254; 254 NH2-VGNLEEELEFLR-COOH searchgui_tinyspectra1.mgf Cmpd 871, +MSn(724.3762), 88.9 min -1.0 724.37624 2+ 2+ 1446.7354589782603 0 1.7035983403308754 100.0 Doubtful -31 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 KGDIIATVDEWGPVNR AK; AK; AK NS; NS; NS 590; 583; 108 NH2-KGDIIATVDEWGPVNR-COOH searchgui_tinyspectra1.mgf Cmpd 582, +MSn(590.6452), 63.2 min -1.0 590.64518 3+ 3+ 1768.9107975712802 0 1.6439836590138295 100.0 Doubtful -32 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 588, +MSn(764.3961), 63.5 min -1.0 764.39611 2+ 2+ 1526.7729071161402 0 3.1135461012602375 100.0 Doubtful -33 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 SVISIGEVESEGQYVTLENTSSGR SK; SK; SK SK; SK; SK 511; 504; 29 NH2-SVISIGEVESEGQYVTLENTSSGR-COOH searchgui_tinyspectra1.mgf Cmpd 758, MSn(847.7508), 76.8 min -1.0 847.75082 3+ 3+ 2540.2242053283903 0 2.5264056585684305 100.0 Doubtful -34 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, +MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -35 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful -36 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 LHVEMESMIEELQMLMDAK NK; NK LS; LS 403; 403 NH2-LHVEMESMIEELQMLMDAK-COOH searchgui_tinyspectra1.mgf Cmpd 1197, +MSn(759.6966), 115.6 min -1.0 759.69661 3+ 3+ 2276.05608409959 0 5.2286496671522364 100.0 Doubtful -37 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISITTYEEEIEDLHATAR LK; LK IN; IN 161; 161 NH2-ISITTYEEEIEDLHATAR-COOH searchgui_tinyspectra1.mgf Cmpd 752, MSn(697.6842), 76.3 min -1.0 697.68418 3+ 3+ 2090.0167787614505 0 6.6562738302421005 100.0 Doubtful -38 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ASLGMAAGVAGGIATK GR; GR DM; DM 63; 63 NH2-ASLGMAAGVAGGIATK-COOH searchgui_tinyspectra1.mgf Cmpd 357, +MSn(687.8723), 46.6 min -1.0 687.87224 2+ 2+ 1373.7336851564505 0 -2.731669916283406 100.0 Doubtful -39 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 NLLLDANKENGELK AK; AK IS; IS 147; 147 NH2-NLLLDANKENGELK-COOH searchgui_tinyspectra1.mgf Cmpd 204, +MSn(524.2825), 35.5 min -1.0 524.28252 3+ 3+ 1569.8362356486905 0 -6.678955564950069 100.0 Doubtful -40 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3 LISATSISPEHK DR; DR; DR ID; ID; ID 549; 542; 67 NH2-LISATSISPEHK-COOH searchgui_tinyspectra1.mgf Cmpd 72, +MSn(428.2391), 26.6 min -1.0 428.23909 3+ 3+ 1281.6928658902905 0 2.0041097707959827 100.0 Doubtful -41 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 SLQAENEQLR VR; VR LK; LK 110; 110 NH2-SLQAENEQLR-COOH searchgui_tinyspectra1.mgf Cmpd 39, +MSn(594.3056), 25.0 min -1.0 594.30561 2+ 2+ 1186.5942144781802 0 2.0634108237361883 100.0 Doubtful -42 cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 ISTGYITENIGGFR NR; NR SE; SE 442; 442 NH2-ISTGYITENIGGFR-COOH searchgui_tinyspectra1.mgf Cmpd 591, +MSn(509.9328), 63.7 min -1.0 509.93283 3+ 3+ 1526.7729071161402 0 2.4535863107993414 100.0 Doubtful