Mercurial > repos > galaxyp > peptideshaker
changeset 51:66690eb50a32 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 1165d86d2f2714093577c54b7e6d3a7149778bd3
| author | galaxyp |
|---|---|
| date | Mon, 31 Dec 2018 02:20:36 -0500 |
| parents | 5814883aa217 |
| children | 864bd76db767 |
| files | macros.xml searchgui_mods.loc.sample |
| diffstat | 2 files changed, 25 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Thu Nov 08 12:23:02 2018 -0500 +++ b/macros.xml Mon Dec 31 02:20:36 2018 -0500 @@ -12,6 +12,7 @@ <regex match="CompomicsError" level="fatal" description="Compomics Error"/> </stdio> </xml> + <token name="@GENERAL_PARAMETERS@"> -frag_tol '${precursor_options.fragment_tol}' -frag_ppm '${precursor_options.fragment_tol_units}' @@ -53,9 +54,10 @@ #end if </token> + <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> - <token name="@SEARCHGUI_VERSION@">3.3.6</token> - <token name="@PEPTIDESHAKER_VERSION@">1.16.32</token> + <token name="@SEARCHGUI_VERSION@">3.3.10</token> + <token name="@PEPTIDESHAKER_VERSION@">1.16.36</token> <xml name="general_options"> <section name="protein_digest_options" expanded="false" title="Protein Digestion Options">
--- a/searchgui_mods.loc.sample Thu Nov 08 12:23:02 2018 -0500 +++ b/searchgui_mods.loc.sample Mon Dec 31 02:20:36 2018 -0500 @@ -15,6 +15,7 @@ Carbamilation of K Carbamilation of protein N-term Carboxymethylation of C +Citrullination of R Deamidation of N Deamidation of N 18O Deamidation of Q @@ -23,6 +24,7 @@ Didehydro of T Diiodination of Y Dimethylation of K +Dimethylation of K 2H(4) Dimethylation of K 2H(6) Dimethylation of K 2H(6) 13C(2) Dimethylation of R @@ -43,6 +45,8 @@ Glutathione of C Guanidination of K Guanidination of peptide N-term +Heme B of C +Heme B of H Hex(1)NAc(1) of S Hex(1)NAc(1) of T Hex(5) HexNAc(4) NeuAc(2) Na of N @@ -63,6 +67,8 @@ ICPL6 of K ICPL6 of peptide N-term Isoleucine 13C(6) 15N(1) +iodoTMT zero of C +iodoTMT 6-plex of C Label of K 2H(4) Leucine 13C(6) 15N(1) Lipoyl of K @@ -107,15 +113,27 @@ SUMO-2/3 Q87R Sodium adduct to D Sodium adduct to E -Sulfonation of S -Sulfonation of T -Sulfonation of Y +Sulfation of S +Sulfation of T +Sulfation of Y +S-nitrosylation TMT 10-plex of K TMT 10-plex of peptide N-term TMT 2-plex of K TMT 2-plex of peptide N-term TMT 6-plex of K +TMT 6-plex of K+4 +TMT 6-plex of K+6 +TMT 6-plex of K+8 TMT 6-plex of peptide N-term +TMT 10-plex of K+4 +TMT 10-plex of K+6 +TMT 10-plex of K+8 +TMT 10-plex of peptide N-term +TMT 11-plex of K+4 +TMT 11-plex of K+6 +TMT 11-plex of K+8 +TMT 11-plex of peptide N-term Thioacyl of peptide N-term Trideuterated Methyl Ester of D Trideuterated Methyl Ester of E