Mercurial > repos > galaxyp > peptideshaker
changeset 37:7f2aeb19650f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 51e887df61a85708547a1513b9a6616bd014d073
| author | galaxyp |
|---|---|
| date | Thu, 23 Mar 2017 18:47:12 -0400 |
| parents | bced7eb9e197 |
| children | 79e37eff006d |
| files | macros.xml peptide_shaker.xml searchgui.xml test-data/peptide_shaker_result1.zip test-data/tiny_searchgui_result1.zip test-data/tiny_searchgui_result_amandaonly.zip |
| diffstat | 6 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Mon Feb 27 14:29:05 2017 -0500 +++ b/macros.xml Thu Mar 23 18:47:12 2017 -0400 @@ -49,7 +49,7 @@ </token> <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> - <token name="@SEARCHGUI_VERSION@">3.2.8</token> + <token name="@SEARCHGUI_VERSION@">3.2.11</token> <xml name="general_options"> <section name="protein_digest_options" expanded="false" title="Protein Digestion Options"> @@ -124,7 +124,7 @@ <option value="1">Parts per million (ppm)</option> <option value="2">Daltons</option> </param> - <param name="precursor_ion_tol" type="float" value="10" label="Percursor Ion Tolerance" + <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance" help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)" help="Provide error value for fragment ions, based on instrument used"/>
--- a/peptide_shaker.xml Mon Feb 27 14:29:05 2017 -0500 +++ b/peptide_shaker.xml Thu Mar 23 18:47:12 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="peptide_shaker" name="Peptide Shaker" version="1.16.0"> +<tool id="peptide_shaker" name="Peptide Shaker" version="1.16.3"> <description> Perform protein identification using various search engines based on results from SearchGUI </description> @@ -6,7 +6,7 @@ <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="1.16.0">peptide-shaker</requirement> + <requirement type="package" version="1.16.3">peptide-shaker</requirement> </requirements> <expand macro="stdio" /> <command>
--- a/searchgui.xml Mon Feb 27 14:29:05 2017 -0500 +++ b/searchgui.xml Thu Mar 23 18:47:12 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@.1"> +<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@"> <description> Perform protein identification using various search engines and prepare results for input to Peptide Shaker </description>