Mercurial > repos > galaxyp > peptideshaker_0201

changeset 0:a92db19b2daa draft

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Uploaded
author galaxyp
date Mon, 24 Jun 2013 13:58:39 -0400
parents
children e837c31e8260
files README.md tool_dependencies.xml
diffstat 2 files changed, 24 insertions(+), 0 deletions(-) [+]
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+++ b/README.md	Mon Jun 24 13:58:39 2013 -0400
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+Contains only a tool_dependencies.xml file fdefining peptideshaker dependency.
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jun 24 13:58:39 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="PeptideShaker" version="0.20.1">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action>
+	<action type="shell_command">chmod -R o+w resources</action>
+        <action type="move_directory_files">
+          <source_directory>.</source_directory>
+          <destination_directory>$INSTALL_DIR/</destination_directory>
+        </action>
+        <action type="shell_command">mkdir -p $BIN_DIR</action>
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+        </action>                
+      </actions>
+    </install>
+    <readme>
+      This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework.
+      (https://github.com/jmchilton/peptide-shaker).
+    </readme>
+  </package>
+</tool_dependency>