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comparison proteinpilot_tabular.xml @ 0:7dcb26ce559c

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author galaxyp
date Wed, 19 Dec 2012 00:22:55 -0500
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children 4c820e82d22c
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-1:000000000000 0:7dcb26ce559c
1 <tool id="proteinpilot_tabular" version="0.1" name="Convert ProteinPilot Group to Tabular">
2 <description></description>
3 <command>
4 #if $quant.use
5 #set $denom = $quant.type
6 #else
7 #set $denom = ""
8 #end if
9 group2xml.exe ${type} $input $output $denom
10 </command>
11 <inputs>
12 <param format="group" name="input" type="data" label="ProteinPilot Group Data" help=""/>
13 <param name="type" type="select" label="Summary Type">
14 <option value="PROTEIN">Protein</option>
15 <option value="PEPTIDE">Peptide</option>
16 </param>
17 <conditional name="quant">
18 <param name="use" type="boolean" label="Include quantation results" truevalue="true" falsevalue="false" />
19 <when value="true">
20 <param name="type" type="select" label="Denominator">
21 <option value="IT113">113</option>
22 <option value="IT114" selected="true">114</option>
23 <option value="IT115">115</option>
24 <option value="IT116">116</option>
25 <option value="IT117">117</option>
26 <option value="IT118">118</option>
27 <option value="IT119">119</option>
28 <option value="IT121">121</option>
29 <option value="Light">Light</option>
30 <option value="Heavy">Heavy</option>
31 <option value="Medium">Medium</option>
32 </param>
33 </when>
34 </conditional>
35 </inputs>
36 <outputs>
37 <data format="tabular" name="output" label="${type} report for ${on_string}"/>
38 </outputs>
39 <help>
40 </help>
41 </tool>