Mercurial > repos > galaxyp > proteinpilot
comparison proteinpilot_group_extractor.xml @ 9:8935cf27e8fd
Fix quantitation Denominator settings.
author | Jim Johnson <jj@umn.edu> |
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date | Mon, 23 Nov 2015 15:34:11 -0600 |
parents | 0aa9d080713e |
children | c0d4ae9647b5 |
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8:0aa9d080713e | 9:8935cf27e8fd |
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1 <tool id="proteinpilot_group_extractor" name="ProteinPilot - GroupFileExtractor" version="5.0.0"> | 1 <tool id="proteinpilot_group_extractor" name="ProteinPilot - GroupFileExtractor" version="5.0.0"> |
2 <description>convert group file to tabular reports, mzIndentML, and MGF</description> | 2 <description>convert group file to tabular reports, mzIndentML, and MGF</description> |
3 <command> | 3 <command> |
4 <![CDATA[ | 4 <![CDATA[ |
5 #if $quant.use | 5 #if $quant.use |
6 #set $denom = $quant.dtype | 6 #set $denom = str($quant.dtype) |
7 #else | 7 #else |
8 #set $denom = "" | 8 #set $denom = "" |
9 #end if | 9 #end if |
10 #set $ptypes = str($ptype).split(',') | 10 #set $ptypes = str($ptype).split(',') |
11 #set $cmd = [] | 11 #set $cmd = [] |
55 <option value="XML">XML</option> | 55 <option value="XML">XML</option> |
56 <option value="METADATAXML">METADATAXML</option> | 56 <option value="METADATAXML">METADATAXML</option> |
57 <option value="METADATACSV">METADATACSV</option> | 57 <option value="METADATACSV">METADATACSV</option> |
58 </param> | 58 </param> |
59 <conditional name="quant"> | 59 <conditional name="quant"> |
60 <param name="use" type="boolean" label="Include quantation results" truevalue="true" falsevalue="false" /> | 60 <param name="use" type="boolean" label="Include quantitation results" truevalue="true" falsevalue="false" /> |
61 <when value="true"> | 61 <when value="true"> |
62 <param name="dtype" type="select" label="Denominator"> | 62 <param name="dtype" type="select" label="Denominator"> |
63 <option value="IT113">113</option> | 63 <option value="IT113">IT113</option> |
64 <option value="IT114" selected="true">114</option> | 64 <option value="IT114" selected="true">IT114</option> |
65 <option value="IT115">115</option> | 65 <option value="IT115">IT115</option> |
66 <option value="IT116">116</option> | 66 <option value="IT116">IT116</option> |
67 <option value="IT117">117</option> | 67 <option value="IT117">IT117</option> |
68 <option value="IT118">118</option> | 68 <option value="IT118">IT118</option> |
69 <option value="IT119">119</option> | 69 <option value="IT119">IT119</option> |
70 <option value="IT121">121</option> | 70 <option value="IT121">IT121</option> |
71 <option value="Light">Light</option> | 71 <option value="Light">Light</option> |
72 <option value="Heavy">Heavy</option> | 72 <option value="Heavy">Heavy</option> |
73 <option value="Medium">Medium</option> | 73 <option value="Medium">Medium</option> |
74 </param> | 74 </param> |
75 </when> | 75 </when> |