Mercurial > repos > galaxyp > proteomics_moff

diff test-data/make_test_data.sh @ 1:8f0e76ad46ef draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/moFF commit cfc15ad41da358a04be60d50c7540ac7d75e1b41
author galaxyp
date Thu, 18 Jan 2018 00:51:56 -0500
parents b4098353ee73
children
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--- a/test-data/make_test_data.sh	Fri Jan 05 12:47:36 2018 -0500
+++ b/test-data/make_test_data.sh	Thu Jan 18 00:51:56 2018 -0500
@@ -2,8 +2,8 @@
 
 #must be run within tools-galaxyp/tools/moFF/test-data
 
-conda create -n mofftestdata moff
-source activate mofftestdata
+conda create -y -n tempmoff moff=1.2.1
+source activate tempmoff
 
 moff_all.py --inputtsv input/mbr_test1.tabular input/mbr_test2.tabular \
     --inputraw input/mbr_test1.mzml input/mbr_test2.mzml \
@@ -32,10 +32,9 @@
 
 # clean up 
 # mbr outputs for moff all
-rm -r output1/mbr_output
+rm -r output1/*
 
-# logs
-rm output1/*.log output2/*.log
+rm output2/test_moff_result.txt output2/test__moff.log
 
-# peptide summary for all
-rm output1/peptide_summary_intensity_moFF_run.tab
+source deactivate tempmoff
+conda env remove -y -n tempmoff