# HG changeset patch
# User galaxyp
# Date 1588791008 14400
# Node ID a96af68dafb2b3f4ea5df68d78771795340fe6aa
# Parent  7af419c90f5fd24637dbc5a7649ccb1d8a76dcd8
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/moFF commit 0bc6529504998425278b15f5b50f94478faede52"

diff -r 7af419c90f5f -r a96af68dafb2 moff.xml
--- a/moff.xml	Thu Mar 28 05:25:24 2019 -0400
+++ b/moff.xml	Wed May 06 14:50:08 2020 -0400
@@ -1,7 +1,7 @@
 <tool id="proteomics_moff" name="moFF" version="@VERSION@.0">
     <description>extracts MS1 intensities from spectrum files</description>
     <macros>
-        <token name="@VERSION@">2.0.2</token>
+        <token name="@VERSION@">2.0.3</token>
         <!-- xml macros, used for shared Galaxy parameter inputs -->
         <xml name="ident_input_macro" token_allow_multiple="true" token_input_type="data">
         <!-- this is exactly the same across all three, except for allowing multiple in MBR and all but not in moff -->
@@ -169,7 +169,7 @@
                         #if ($task.match_filter.ptm_file):
                             --ptm_file '$task.match_filter.ptm_file'
                         #else:
-                            --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json' 
+                            --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json'
                         #end if
                     #end if
           #if ($task.peptide_summary):
@@ -216,7 +216,7 @@
                         --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json'
                     #end if
                #end if
-           
+
            #if $task.peptide_summary:
                && mv ./out/peptide_summary_intensity_moFF_run.tab '$output_peptide_summary'
 		   #end if
@@ -255,7 +255,7 @@
 					help="Specify rt window for the peak in minutes." />
 				<param argument="--rt_peak_win_match" type="float" value="1.2" label="retention time window for the matched peak"
                     help="Specify the retention time window for the matched peak in minutes." />
-                <expand macro="filt_matched_peptide"/>	
+                <expand macro="filt_matched_peptide"/>
                 <param argument="--peptide_summary" type="boolean" value="true" label="Output the peptide summary?"/>
             </when>
             <when value="mbr">