Mercurial > repos > galaxyp > proteomiqon_labelfreeproteinquantification

view test-data/result_3.json @ 0:39fa1ddd587d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labelfreeproteinquantification commit 3d3272b1ebe527f4b1e80c08f915c6235625621c"
author galaxyp
date Wed, 13 Oct 2021 18:45:16 +0000
parents
children
line wrap: on
line source


            
            {
                "ModificationFilter": {
                    "Case": "UseOnly",
                    "Fields": [
                        [
                            {
                                "Case": "Acetylation'ProtNTerm'"
                            },
                            {
                                "Case": "Carbamidomethyl'Cys'"
                            },
                            {
                                "Case": "Oxidation'Met'"
                            },
                            {
                                "Case": "Phosphorylation'Ser'Thr'Tyr'"
                            },
                            {
                                "Case": "Pyro_Glu'GluNterm'"
                            },
                            {
                                "Case": "Pyro_Glu'GlnNterm'"
                            },
                        ]
                    ]
                },
                "AggregatePeptideChargeStatesParams": {
                    "Case": "Some",
                    "Fields": [
                        {
                            "Transform": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                {
                                                    "Case": "Substract",
                                                    "Fields": [
                                                        2.0
                                                    ]
                                                }
                                            ]
                                        },
                                    }
                                ]
                            },
                            "SingleFilters": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                [
                                                    {
                                                        "Case": "IsBiggerThan",
                                                        "Fields": [
                                                            1.0 
                                                        ]
                                                    },
                                                ]
                                            ]
                                        },
                                    }
                                ]
                            },
                            "GroupFilters": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                [
                                                    {
                                                        "Case": "Stdev",
                                                        "Fields": [
                                                        2.0
                                                        ]
                                                    }
                                                ]
                                            ]
                                        },
                                    }
                                ]
                            },
                            "Aggregation": {
                                "Light": {
                                    "Case": "Median"
                                }
                            }
                        }
                    ]                    
                },
                "AggregateModifiedPeptidesParams": {
                    "Case": "Some",
                    "Fields": [
                        {
                            "Transform": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                {
                                                    "Case": "Add",
                                                    "Fields": [
                                                        2.0
                                                    ]
                                                }
                                            ]
                                        },
                                    }
                                ]
                            },
                            "SingleFilters": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                [
                                                    {
                                                        "Case": "IsSmallerThan",
                                                        "Fields": [
                                                            2.0 
                                                        ]
                                                    }
                                                ]
                                            ]
                                        },
                                    }
                                ]
                            },
                            "GroupFilters": {
                                "Case": "Some",
                                "Fields": [
                                    {
                                        "Light": {
                                            "Case": "Some",
                                            "Fields": [
                                                [
                                                    {
                                                        "Case": "Tukey",
                                                        "Fields": [
                                                        1.0
                                                        ]
                                                    },
                                                ]
                                            ]
                                        },
                                    }
                                ]
                            },
                            "Aggregation": {
                                "Light": {
                                    "Case": "Sum"
                                }
                            }
                        }
                    ]                    
                },
                "AggregateToProteinGroupsParams": {
                    "Transform": {
                        "Case": "Some",
                        "Fields": [
                            {
                                "Light": {
                                    "Case": "Some",
                                    "Fields": [
                                        {
                                            "Case": "DivideBy",
                                            "Fields": [
                                                2.0
                                            ]
                                        }
                                    ]
                                },
                            }
                        ]
                    },
                    "SingleFilters": null,
                    "GroupFilters": null,
                    "Aggregation": {
                        "Light": {
                            "Case": "Mean"
                        }
                    }                   
                },
            }