Mercurial > repos > galaxyp > psm_eval

diff tool_dependencies.xml @ 3:91fb73c8619c draft default tip

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author galaxyp
date Fri, 26 Sep 2014 14:52:07 -0400
parents 9743296a53a3
children
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Jul 12 12:40:08 2013 -0400
+++ b/tool_dependencies.xml	Fri Sep 26 14:52:07 2014 -0400
@@ -1,14 +1,27 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="psm_eval" version="0.1.0">
+    <package name="binaries_for_psm_eval" version="22">
         <install version="1.0">
             <actions>
-              <action type="download_by_url">https://github.com/jmchilton/psm-eval/archive/8c05781330.zip</action>
-              <action type="setup_virtualenv" />
+              <action type="download_by_url">https://github.com/jmchilton/psm-eval/archive/9677d5a119.zip</action>
+              <action type="move_directory_files">
+                <source_directory>.</source_directory>
+                <destination_directory>$INSTALL_DIR/</destination_directory>
+              </action>
+              <action type="chmod"><file mode="755">$INSTALL_DIR/psm_eval</file></action>
+              <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+              </action>
+              <action type="setup_virtualenv">
+                lxml
+                numpy
+                pyteomics
+                pyyaml
+              </action>
             </actions>
         </install>
         <readme>
           Sets up a virtualenv for psm_eval.
         </readme>
     </package>
-</tool_dependency>
\ No newline at end of file
+</tool_dependency>