Mercurial > repos > galaxyp > pyteomics_mztab2tsv
annotate mztab2tsv.xml @ 1:a475c1906e0b draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 58fe8232b7f4659b37e8725197d63e81efae0683"
| author | galaxyp |
|---|---|
| date | Fri, 15 Jan 2021 21:10:59 +0000 |
| parents | 84e4b5d4b7ad |
| children |
| rev | line source |
|---|---|
|
0
84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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1 <tool id="mztab2tsv" name="pyteomics" version="@TOOL_VERSION@" profile="20.01" license="MIT"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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2 <description>convert mztab to tabular</description> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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3 <macros> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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4 <token name="@TOOL_VERSION@">4.4.1</token> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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5 <xml name="output" token_type="" token_label=""> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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6 <data name="out_@TYPE@" format="tabular" from_work_dir="@TYPE@.tsv" label="${tool.name} on ${on_string}: @LABEL@"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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7 <filter>"@TYPE@" in out_select</filter> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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8 </data> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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9 </xml> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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10 </macros> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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11 <xrefs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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12 <xref type="bio.tools">pyteomics</xref> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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13 </xrefs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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14 <edam_topics> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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15 <edam_topic>topic_0121</edam_topic><!-- proteomics --> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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16 <edam_topic>topic_3520</edam_topic><!-- proteomics experiment--> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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17 </edam_topics> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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18 <edam_operations> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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19 <edam_operation>operation_3434</edam_operation><!-- Convert a data set from one form to another --> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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20 </edam_operations> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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21 <requirements> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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22 <requirement type="package" version="@TOOL_VERSION@">pyteomics</requirement> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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23 </requirements> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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24 <command detect_errors="exit_code"><![CDATA[ |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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25 ## make sure that selected outputs exist even if the tool does not generate them |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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26 #for o in $out_select |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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27 touch '$o'.tsv && |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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28 #end for |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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29 '$__tool_directory__/mztab_reader.py' --path_in '$path_in' |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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30 ]]></command> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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31 <inputs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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32 <param argument="--path_in" type="data" format="mztab,mztab2" label="mztab or mztab2 data set" help="" /> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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33 <param name="out_select" type="select" label="Select desired tables" multiple="true" help=""> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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34 <option value="mtd" selected="true">Metadata (v1,v2)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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35 <option value="prt">Protein table (v1)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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36 <option value="pep">Peptide table (v1)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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37 <option value="psm">Peptide spectrum match table (v1)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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changeset
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38 <option value="sml">Small molecule table (v1,v2)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
diff
changeset
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39 <option value="smf">Small molecule feature table (v2)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
diff
changeset
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40 <option value="sme">Small molecule evidence table (v2)</option> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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41 </param> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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42 </inputs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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43 <outputs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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44 <expand macro="output" type="mtd" label="Metadata"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
diff
changeset
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45 <expand macro="output" type="prt" label="Proteins"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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46 <expand macro="output" type="pep" label="Peptides"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
diff
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47 <expand macro="output" type="psm" label="Peptide spectrum matches"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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48 <expand macro="output" type="sml" label="Small molecules"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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49 <expand macro="output" type="smf" label="Small molecule feature"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
diff
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50 <expand macro="output" type="sme" label="Small molecule evidence"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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51 </outputs> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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52 <tests> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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53 <test expect_num_outputs="5"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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54 <param name="path_in" ftype="mztab" value="1.mztab"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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55 <param name="out_select" value="mtd,prt,pep,psm,sml"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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56 <output name="out_mtd" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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57 <assert_contents><has_text text="mzTab-version"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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58 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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59 <output name="out_prt" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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60 <assert_contents><has_text text="accession"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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61 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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62 <output name="out_pep" ftype="tabular"> |
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1
a475c1906e0b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 58fe8232b7f4659b37e8725197d63e81efae0683"
galaxyp
parents:
0
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63 <assert_contents><has_n_lines n="0"/></assert_contents> |
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0
84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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64 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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65 <output name="out_psm" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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66 <assert_contents><has_text text="PSM_ID"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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67 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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68 <output name="out_sml" ftype="tabular"> |
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1
a475c1906e0b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 58fe8232b7f4659b37e8725197d63e81efae0683"
galaxyp
parents:
0
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69 <assert_contents><has_n_lines n="0"/></assert_contents> |
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0
84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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70 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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71 </test> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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72 <test expect_num_outputs="4"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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73 <param name="path_in" ftype="mztab" value="2.mztab"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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74 <param name="out_select" value="mtd,sml,smf,sme"/> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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75 <output name="out_mtd" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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76 <assert_contents><has_text text="mzTab-version"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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77 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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78 <output name="out_sml" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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79 <assert_contents><has_text text="SML_ID"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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80 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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81 <output name="out_smf" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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82 <assert_contents><has_text text="SMF_ID"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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83 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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84 <output name="out_sme" ftype="tabular"> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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85 <assert_contents><has_text text="SME_ID"/></assert_contents> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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86 </output> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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87 </test> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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88 </tests> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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89 <help><![CDATA[ |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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90 Convert a mztab or mztab2 file to tabular files using the pyteomics library https://pyteomics.readthedocs.io/en/latest/. |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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91 |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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92 The specifications of the mztab and mztab2 formats can be found here https://github.com/HUPO-PSI/mzTab/. |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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93 ]]></help> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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94 <citations> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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95 <citation type="doi">10.1007/s13361-012-0516-6</citation> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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96 <citation type="doi">10.1021/acs.jproteome.8b00717</citation> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
parents:
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97 </citations> |
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84e4b5d4b7ad
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics commit 49b21b01937067ffc7cf088e615d68177644640b"
galaxyp
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98 </tool> |