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comparison quantp.xml @ 1:bcc7a4c4cc29 draft

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planemo upload commit 1887dff812162880d66b003a927867cd5000c98f
author galaxyp
date Thu, 20 Dec 2018 16:06:05 -0500
parents 75faf9a89f5b
children ed0bb50d7ffe
comparison
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0:75faf9a89f5b 1:bcc7a4c4cc29
1 <tool id="quantp" name="QuanTP" version="1.0.0"> 1 <tool id="quantp" name="QuanTP" version="1.1.0">
2 <description>Correlation between protein and transcript abundances</description> 2 <description>Correlation between protein and transcript abundances</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.10.4">r-data.table</requirement> 4 <requirement type="package" version="1.10.4">r-data.table</requirement>
5 <requirement type="package" version="3.0.1">r-gplots</requirement> 5 <requirement type="package" version="3.0.1">r-gplots</requirement>
6 <requirement type="package" version="0.7.6">r-dplyr</requirement> 6 <requirement type="package" version="0.7.6">r-dplyr</requirement>
7 <requirement type="package" version="3.0.0">r-ggplot2</requirement> 7 <requirement type="package" version="3.0.0">r-ggplot2</requirement>
8 <requirement type="package" version="0.4.5">r-ggfortify</requirement> 8 <requirement type="package" version="0.4.5">r-ggfortify</requirement>
9 <requirement type="package" version="4.8.0">r-plotly</requirement>
10 <requirement type="package" version="0.6.1.2">r-d3heatmap</requirement>
9 </requirements> 11 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
11 Rscript '$__tool_directory__/quantp.r' 13 Rscript '$__tool_directory__/quantp.r'
12 $experiment_design_option.sample_type 14 $experiment_design_option.sample_type
13 $experiment_design_option.method_type 15 $experiment_design_option.method_type
106 <param name="nclust" value="4"/> 108 <param name="nclust" value="4"/>
107 <param name="hm_nclust" value="5"/> 109 <param name="hm_nclust" value="5"/>
108 <output name="html_file"> 110 <output name="html_file">
109 <assert_contents> 111 <assert_contents>
110 <has_text text="SAMPLE DISTRIBUTION" /> 112 <has_text text="SAMPLE DISTRIBUTION" />
113 <has_text text="plotly" />
111 </assert_contents> 114 </assert_contents>
112 </output> 115 </output>
113 </test> 116 </test>
114 </tests> 117 </tests>
115 <help><![CDATA[ 118 <help><![CDATA[