Mercurial > repos > galaxyp > reactome_pathwaymatcher

comparison README.rst @ 1:5d0c44bc354d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 7e04827e48352f6b28cf2e2c93a89a270e5bf026
author galaxyp
date Wed, 04 Jul 2018 04:28:07 -0400
parents f66af2b04a98
children 9a599f278852
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0:f66af2b04a98 1:5d0c44bc354d
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15 General Requirements 15 General Requirements
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18 This tool requires a Java runtime 1.6 or greater to work. To avoid out of memory errors you should set the maximum heapspace for java processes as the default is most likely too small. For example, to set this in your shell: 18 This tool requires a Java runtime 1.8 or greater to work. To avoid out of memory errors you should set the maximum heapspace for java processes as the default is most likely too small. For example, to set this in your shell:
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20 export _JAVA_OPTIONS='-Xmx1500M' 20 export _JAVA_OPTIONS='-Xmx1500M'
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22 On some systems you may also need to adjust the amount of memory available for class definitions in addition to the maximum heapspace. For example:
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24 export _JAVA_OPTIONS='-Xmx1500M -XX:MaxPermSize=256M'
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26 It is also possible to set this on a per tool basis using advanced features of the galaxy job config system. 22 It is also possible to set this on a per tool basis using advanced features of the galaxy job config system.
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29 License 25 License