Mercurial > repos > galaxyp > reactome_pathwaymatcher

comparison pathwaymatcher.xml @ 5:a2ab72e994dc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit e86212821a8621c4e99150c6fd7e4c4a1437a110
author galaxyp
date Sun, 04 Aug 2019 15:52:53 -0400
parents 3e510701a712
children 622dd6d51032
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4:3e510701a712 5:a2ab72e994dc
2 <description> 2 <description>
3 PathwayMatcher is a software tool to search for pathways related to a list of proteins in Reactome. 3 PathwayMatcher is a software tool to search for pathways related to a list of proteins in Reactome.
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@PATHWAYMATCHER_VERSION@">1.9.1</token> 6 <token name="@PATHWAYMATCHER_VERSION@">1.9.1</token>
7 <token name="@TOOL_SUBVERSION@">2</token> 7 <token name="@TOOL_SUBVERSION@">3</token>
8 <xml name="input_fasta"> 8 <xml name="input_fasta">
9 <param format="fasta" name="input_database" type="data" label="Protein Database" 9 <param format="fasta" name="input_database" type="data" label="Protein Database"
10 help="Select FASTA database from history"/> 10 help="Select FASTA database from history"/>
11 </xml> 11 </xml>
12 </macros> 12 </macros>
569 .. _Output: https://github.com/PathwayAnalysisPlatform/PathwayMatcher/wiki/Output 569 .. _Output: https://github.com/PathwayAnalysisPlatform/PathwayMatcher/wiki/Output
570 570
571 </help> 571 </help>
572 572
573 <citations> 573 <citations>
574 <citation type="doi">doi:10.1101/375097</citation> 574 <citation type="doi">doi:10.1093/gigascience/giz088</citation>
575 </citations> 575 </citations>
576 576
577 </tool> 577 </tool>