Mercurial > repos > galaxyp > reactome_pathwaymatcher
diff test-data/proteoforms_graphs/geneInternalEdges.tsv @ 3:2cd67294abbd draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 79d03b32b395b4c1385ff934251b17ea8950187b
| author | galaxyp |
|---|---|
| date | Wed, 08 May 2019 13:41:47 -0400 |
| parents | f66af2b04a98 |
| children |
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--- a/test-data/proteoforms_graphs/geneInternalEdges.tsv Thu Jul 26 17:00:38 2018 -0400 +++ b/test-data/proteoforms_graphs/geneInternalEdges.tsv Wed May 08 13:41:47 2019 -0400 @@ -1,411 +1,1 @@ id1 id2 type container_id role1 role2 -PDK1 PDPK1 Reaction R-HSA-198270 input input -PDPK1 PDK1 Reaction R-HSA-198270 input input -PDK1 AKT1 Reaction R-HSA-198270 input input -PDK1 PKB Reaction R-HSA-198270 input input -PDK1 RAC Reaction R-HSA-198270 input input -PDPK1 AKT1 Reaction R-HSA-198270 input input -PDPK1 PKB Reaction R-HSA-198270 input input -PDPK1 RAC Reaction R-HSA-198270 input input -AKT1 PDK1 Reaction R-HSA-198270 input input -AKT1 PDPK1 Reaction R-HSA-198270 input input -PKB PDK1 Reaction R-HSA-198270 input input -PKB PDPK1 Reaction R-HSA-198270 input input -RAC PDK1 Reaction R-HSA-198270 input input -RAC PDPK1 Reaction R-HSA-198270 input input -AKT1 PKB Reaction R-HSA-198270 input input -AKT1 RAC Reaction R-HSA-198270 input input -PKB AKT1 Reaction R-HSA-198270 input input -PKB RAC Reaction R-HSA-198270 input input -RAC AKT1 Reaction R-HSA-198270 input input -RAC PKB Reaction R-HSA-198270 input input -PDK1 GAB2 Reaction R-HSA-198284 input regulator -PDK1 KIAA0571 Reaction R-HSA-198284 input regulator -PDPK1 GAB2 Reaction R-HSA-198284 input regulator -PDPK1 KIAA0571 Reaction R-HSA-198284 input regulator -AKT1 GAB2 Reaction R-HSA-198284 input regulator -AKT1 KIAA0571 Reaction R-HSA-198284 input regulator -PKB GAB2 Reaction R-HSA-198284 input regulator -PKB KIAA0571 Reaction R-HSA-198284 input regulator -RAC GAB2 Reaction R-HSA-198284 input regulator -RAC KIAA0571 Reaction R-HSA-198284 input regulator -GAB2 PDK1 Reaction R-HSA-198284 regulator input -GAB2 PDPK1 Reaction R-HSA-198284 regulator input -KIAA0571 PDK1 Reaction R-HSA-198284 regulator input -KIAA0571 PDPK1 Reaction R-HSA-198284 regulator input -GAB2 AKT1 Reaction R-HSA-198284 regulator input -GAB2 PKB Reaction R-HSA-198284 regulator input -GAB2 RAC Reaction R-HSA-198284 regulator input -KIAA0571 AKT1 Reaction R-HSA-198284 regulator input -KIAA0571 PKB Reaction R-HSA-198284 regulator input -KIAA0571 RAC Reaction R-HSA-198284 regulator input -GAB2 KIAA0571 Reaction R-HSA-198284 regulator regulator -KIAA0571 GAB2 Reaction R-HSA-198284 regulator regulator -AKT1 AKT1 Complex R-HSA-2317313 component component -PKB PKB Complex R-HSA-2317313 component component -RAC RAC Complex R-HSA-2317313 component component -PDK1 PDK1 Complex R-HSA-2317313 component component -PDPK1 PDPK1 Complex R-HSA-2317313 component component -PDK1 PDK1 Set R-HSA-432180 member/candidate member/candidate -PDPK1 PDPK1 Set R-HSA-432180 member/candidate member/candidate -AKT1 AKT1 Set R-HSA-432180 member/candidate member/candidate -PKB PKB Set R-HSA-432180 member/candidate member/candidate -RAC RAC Set R-HSA-432180 member/candidate member/candidate -ABL ABL1 Reaction R-HSA-8985227 regulator regulator -ABL JTK7 Reaction R-HSA-8985227 regulator regulator -ABL1 ABL Reaction R-HSA-8985227 regulator regulator -ABL1 JTK7 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input input -PRKM11 MAPK11 Reaction R-HSA-448957 input input -PRKM11 SAPK2 Reaction R-HSA-448957 input input -PRKM11 SAPK2B Reaction R-HSA-448957 input input -SAPK2 MAPK11 Reaction R-HSA-448957 input input -SAPK2 PRKM11 Reaction R-HSA-448957 input input -SAPK2 SAPK2B Reaction R-HSA-448957 input input -SAPK2B MAPK11 Reaction R-HSA-448957 input input -SAPK2B PRKM11 Reaction R-HSA-448957 input input -SAPK2B SAPK2 Reaction R-HSA-448957 input input -MAPK11 ABL Reaction R-HSA-448957 input input -MAPK11 ABL1 Reaction R-HSA-448957 input input -MAPK11 JTK7 Reaction R-HSA-448957 input input -PRKM11 ABL Reaction R-HSA-448957 input input -PRKM11 ABL1 Reaction R-HSA-448957 input input -PRKM11 JTK7 Reaction R-HSA-448957 input input -SAPK2 ABL Reaction R-HSA-448957 input input -SAPK2 ABL1 Reaction R-HSA-448957 input input -SAPK2 JTK7 Reaction R-HSA-448957 input input -SAPK2B ABL Reaction R-HSA-448957 input input -SAPK2B ABL1 Reaction R-HSA-448957 input input -SAPK2B JTK7 Reaction R-HSA-448957 input input -ABL MAPK11 Reaction R-HSA-448957 input input -ABL PRKM11 Reaction R-HSA-448957 input input -ABL SAPK2 Reaction R-HSA-448957 input input -ABL SAPK2B Reaction R-HSA-448957 input input -ABL1 MAPK11 Reaction R-HSA-448957 input input -ABL1 PRKM11 Reaction R-HSA-448957 input input -ABL1 SAPK2 Reaction R-HSA-448957 input input -ABL1 SAPK2B Reaction R-HSA-448957 input input -JTK7 MAPK11 Reaction R-HSA-448957 input input -JTK7 PRKM11 Reaction R-HSA-448957 input input -JTK7 SAPK2 Reaction R-HSA-448957 input input -JTK7 SAPK2B Reaction R-HSA-448957 input input -ABL ABL Complex R-HSA-448881 component component -ABL1 ABL1 Complex R-HSA-448881 component component -JTK7 JTK7 Complex R-HSA-448881 component component -MAPK11 MAPK11 Complex R-HSA-448881 component component -PRKM11 PRKM11 Complex R-HSA-448881 component component -SAPK2 SAPK2 Complex R-HSA-448881 component component -SAPK2B SAPK2B Complex R-HSA-448881 component component -ABL ABL Set R-HSA-8942611 member/candidate member/candidate 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Reaction R-HSA-1839112 input catalyst -STAT5A BCR1 Reaction R-HSA-1839112 input catalyst -STAT5A D22S11 Reaction R-HSA-1839112 input catalyst -STAT5 STAT5A Reaction R-HSA-1839112 input input -STAT5A STAT5 Reaction R-HSA-1839112 input input -GAB2 KIAA0571 Reaction R-HSA-1839102 input input -KIAA0571 GAB2 Reaction R-HSA-1839102 input input -GAB2 BCR Reaction R-HSA-1839102 input input -GAB2 BCR1 Reaction R-HSA-1839102 input input -GAB2 D22S11 Reaction R-HSA-1839102 input input -KIAA0571 BCR Reaction R-HSA-1839102 input input -KIAA0571 BCR1 Reaction R-HSA-1839102 input input -KIAA0571 D22S11 Reaction R-HSA-1839102 input input -BCR GAB2 Reaction R-HSA-1839102 input input -BCR KIAA0571 Reaction R-HSA-1839102 input input -BCR1 GAB2 Reaction R-HSA-1839102 input input -BCR1 KIAA0571 Reaction R-HSA-1839102 input input -D22S11 GAB2 Reaction R-HSA-1839102 input input -D22S11 KIAA0571 Reaction R-HSA-1839102 input input -BCR BCR Complex R-HSA-1839062 component component -BCR1 BCR1 Complex R-HSA-1839062 component component -D22S11 D22S11 Complex R-HSA-1839062 component component -GAB2 GAB2 Complex R-HSA-1839048 component component -KIAA0571 KIAA0571 Complex R-HSA-1839048 component component -BCR BCR Set R-HSA-5691527 member/candidate member/candidate -BCR1 BCR1 Set R-HSA-5691527 member/candidate member/candidate -D22S11 D22S11 Set R-HSA-5691527 member/candidate member/candidate -SRC SRC1 Reaction R-HSA-2316434 catalyst catalyst -SRC1 SRC Reaction R-HSA-2316434 catalyst catalyst -SRC GAB2 Reaction R-HSA-1562641 input input -SRC KIAA0571 Reaction R-HSA-1562641 input input -SRC1 GAB2 Reaction R-HSA-1562641 input input -SRC1 KIAA0571 Reaction R-HSA-1562641 input input -GAB2 SRC Reaction R-HSA-1562641 input input -GAB2 SRC1 Reaction R-HSA-1562641 input input -KIAA0571 SRC Reaction R-HSA-1562641 input input -KIAA0571 SRC1 Reaction R-HSA-1562641 input input -GAB2 KIAA0571 Reaction R-HSA-1562641 input input -KIAA0571 GAB2 Reaction R-HSA-1562641 input input -CBL CBL2 Reaction R-HSA-205244 input input -CBL RNF55 Reaction R-HSA-205244 input input -CBL2 CBL Reaction R-HSA-205244 input input -CBL2 RNF55 Reaction R-HSA-205244 input input -RNF55 CBL Reaction R-HSA-205244 input input -RNF55 CBL2 Reaction R-HSA-205244 input input -CBL SRC Reaction R-HSA-205244 input input -CBL SRC1 Reaction R-HSA-205244 input input -CBL2 SRC Reaction R-HSA-205244 input input -CBL2 SRC1 Reaction R-HSA-205244 input input -RNF55 SRC Reaction R-HSA-205244 input input -RNF55 SRC1 Reaction R-HSA-205244 input input -SRC CBL Reaction R-HSA-205244 input input -SRC CBL2 Reaction R-HSA-205244 input input -SRC RNF55 Reaction R-HSA-205244 input input -SRC1 CBL Reaction R-HSA-205244 input input -SRC1 CBL2 Reaction R-HSA-205244 input input -SRC1 RNF55 Reaction R-HSA-205244 input input -SRC STAT5 Reaction R-HSA-1433456 input input -SRC STAT5A Reaction R-HSA-1433456 input input -SRC1 STAT5 Reaction R-HSA-1433456 input input -SRC1 STAT5A Reaction R-HSA-1433456 input input -SRC APRF Reaction R-HSA-1433456 input input -SRC STAT3 Reaction R-HSA-1433456 input input -SRC1 APRF Reaction R-HSA-1433456 input input -SRC1 STAT3 Reaction R-HSA-1433456 input input -STAT5 SRC Reaction R-HSA-1433456 input input -STAT5 SRC1 Reaction R-HSA-1433456 input input -STAT5A SRC Reaction R-HSA-1433456 input input -STAT5A SRC1 Reaction R-HSA-1433456 input input -STAT5 STAT5A Reaction R-HSA-1433456 input input -STAT5A STAT5 Reaction R-HSA-1433456 input input -STAT5 APRF Reaction R-HSA-1433456 input input -STAT5 STAT3 Reaction R-HSA-1433456 input input -STAT5A APRF Reaction R-HSA-1433456 input input -STAT5A STAT3 Reaction R-HSA-1433456 input input -APRF SRC Reaction R-HSA-1433456 input input -APRF SRC1 Reaction R-HSA-1433456 input input -STAT3 SRC Reaction R-HSA-1433456 input input -STAT3 SRC1 Reaction R-HSA-1433456 input input -APRF STAT5 Reaction R-HSA-1433456 input input -APRF STAT5A Reaction R-HSA-1433456 input input -STAT3 STAT5 Reaction R-HSA-1433456 input input -STAT3 STAT5A Reaction R-HSA-1433456 input input -APRF STAT3 Reaction R-HSA-1433456 input input -STAT3 APRF Reaction R-HSA-1433456 input input -ERK1 MAPK3 Reaction R-HSA-418176 input input -ERK1 PRKM3 Reaction R-HSA-418176 input input -MAPK3 ERK1 Reaction R-HSA-418176 input input -MAPK3 PRKM3 Reaction R-HSA-418176 input input -PRKM3 ERK1 Reaction R-HSA-418176 input input -PRKM3 MAPK3 Reaction R-HSA-418176 input input -ERK1 SRC Reaction R-HSA-418176 input input -ERK1 SRC1 Reaction R-HSA-418176 input input -MAPK3 SRC Reaction R-HSA-418176 input input -MAPK3 SRC1 Reaction R-HSA-418176 input input -PRKM3 SRC Reaction R-HSA-418176 input input -PRKM3 SRC1 Reaction R-HSA-418176 input input -SRC ERK1 Reaction R-HSA-418176 input input -SRC MAPK3 Reaction R-HSA-418176 input input -SRC PRKM3 Reaction R-HSA-418176 input input -SRC1 ERK1 Reaction R-HSA-418176 input input -SRC1 MAPK3 Reaction R-HSA-418176 input input -SRC1 PRKM3 Reaction R-HSA-418176 input input -SRC SRC Complex R-HSA-9021654 component component -SRC1 SRC1 Complex R-HSA-9021654 component component -ERK1 ERK1 Complex R-HSA-5672724 component component -MAPK3 MAPK3 Complex R-HSA-5672724 component component -PRKM3 PRKM3 Complex R-HSA-5672724 component component -CBL CBL Complex R-HSA-205200 component component -CBL2 CBL2 Complex R-HSA-205200 component component -RNF55 RNF55 Complex R-HSA-205200 component component -GAB2 GAB2 Complex R-HSA-1562560 component component -KIAA0571 KIAA0571 Complex R-HSA-1562560 component component -APRF APRF Complex R-HSA-1433527 component component -STAT3 STAT3 Complex R-HSA-1433527 component component -STAT5 STAT5 Complex R-HSA-1433527 component component -STAT5A STAT5A Complex R-HSA-1433527 component component -SRC SRC Set R-HSA-2316432 member/candidate member/candidate -SRC1 SRC1 Set R-HSA-2316432 member/candidate member/candidate -GAB2 GAB2 Set R-HSA-9031773 member/candidate member/candidate -KIAA0571 KIAA0571 Set R-HSA-9031773 member/candidate member/candidate -AKT1 PKB Reaction R-HSA-199298 catalyst catalyst -AKT1 RAC Reaction R-HSA-199298 catalyst catalyst -PKB AKT1 Reaction R-HSA-199298 catalyst catalyst -PKB RAC Reaction R-HSA-199298 catalyst catalyst -RAC AKT1 Reaction R-HSA-199298 catalyst catalyst -RAC PKB Reaction R-HSA-199298 catalyst catalyst -AKT1 CREB1 Reaction R-HSA-199298 catalyst input -PKB CREB1 Reaction R-HSA-199298 catalyst input -RAC CREB1 Reaction R-HSA-199298 catalyst input -CREB1 AKT1 Reaction R-HSA-199298 input catalyst -CREB1 PKB Reaction R-HSA-199298 input catalyst -CREB1 RAC Reaction R-HSA-199298 input catalyst -CREB1 CREB1 Complex R-HSA-111911 component component -CBL CBL2 Reaction R-HSA-1112666 catalyst catalyst -CBL RNF55 Reaction R-HSA-1112666 catalyst catalyst -CBL2 CBL Reaction R-HSA-1112666 catalyst catalyst -CBL2 RNF55 Reaction R-HSA-1112666 catalyst catalyst -RNF55 CBL Reaction R-HSA-1112666 catalyst catalyst -RNF55 CBL2 Reaction R-HSA-1112666 catalyst catalyst -CBL CRKL Reaction R-HSA-912790 input input -CBL2 CRKL Reaction R-HSA-912790 input input -RNF55 CRKL Reaction R-HSA-912790 input input -CRKL CBL Reaction R-HSA-912790 input input -CRKL CBL2 Reaction R-HSA-912790 input input -CRKL RNF55 Reaction R-HSA-912790 input input -CBL CBL Complex R-HSA-983687 component component -CBL2 CBL2 Complex R-HSA-983687 component component -RNF55 RNF55 Complex R-HSA-983687 component component -CRKL CRKL Complex R-HSA-912774 component component -CBL CBL Set R-HSA-8876353 member/candidate member/candidate -CBL2 CBL2 Set R-HSA-8876353 member/candidate member/candidate -RNF55 RNF55 Set R-HSA-8876353 member/candidate member/candidate -ERK1 MAPK3 Reaction R-HSA-6811472 input input -ERK1 PRKM3 Reaction R-HSA-6811472 input input -MAPK3 ERK1 Reaction R-HSA-6811472 input input -MAPK3 PRKM3 Reaction R-HSA-6811472 input input -PRKM3 ERK1 Reaction R-HSA-6811472 input input -PRKM3 MAPK3 Reaction R-HSA-6811472 input input -MAPK11 PRKM11 Reaction R-HSA-168053 catalyst catalyst -MAPK11 SAPK2 Reaction R-HSA-168053 catalyst catalyst -MAPK11 SAPK2B Reaction R-HSA-168053 catalyst catalyst -PRKM11 MAPK11 Reaction R-HSA-168053 catalyst catalyst -PRKM11 SAPK2 Reaction R-HSA-168053 catalyst catalyst -PRKM11 SAPK2B Reaction R-HSA-168053 catalyst catalyst -SAPK2 MAPK11 Reaction R-HSA-168053 catalyst catalyst -SAPK2 PRKM11 Reaction R-HSA-168053 catalyst catalyst -SAPK2 SAPK2B Reaction R-HSA-168053 catalyst catalyst -SAPK2B MAPK11 Reaction R-HSA-168053 catalyst catalyst -SAPK2B PRKM11 Reaction R-HSA-168053 catalyst catalyst -SAPK2B SAPK2 Reaction R-HSA-168053 catalyst catalyst -MAPK11 ERK1 Reaction R-HSA-168053 catalyst catalyst -MAPK11 MAPK3 Reaction R-HSA-168053 catalyst catalyst -MAPK11 PRKM3 Reaction R-HSA-168053 catalyst catalyst -PRKM11 ERK1 Reaction R-HSA-168053 catalyst catalyst -PRKM11 MAPK3 Reaction R-HSA-168053 catalyst catalyst -PRKM11 PRKM3 Reaction R-HSA-168053 catalyst catalyst -SAPK2 ERK1 Reaction R-HSA-168053 catalyst catalyst -SAPK2 MAPK3 Reaction R-HSA-168053 catalyst catalyst -SAPK2 PRKM3 Reaction R-HSA-168053 catalyst catalyst -SAPK2B ERK1 Reaction R-HSA-168053 catalyst catalyst -SAPK2B MAPK3 Reaction R-HSA-168053 catalyst catalyst -SAPK2B PRKM3 Reaction R-HSA-168053 catalyst catalyst -ERK1 MAPK11 Reaction R-HSA-168053 catalyst catalyst -ERK1 PRKM11 Reaction R-HSA-168053 catalyst catalyst -ERK1 SAPK2 Reaction R-HSA-168053 catalyst catalyst -ERK1 SAPK2B Reaction R-HSA-168053 catalyst catalyst -MAPK3 MAPK11 Reaction R-HSA-168053 catalyst catalyst -MAPK3 PRKM11 Reaction R-HSA-168053 catalyst catalyst -MAPK3 SAPK2 Reaction R-HSA-168053 catalyst catalyst -MAPK3 SAPK2B Reaction R-HSA-168053 catalyst catalyst -PRKM3 MAPK11 Reaction R-HSA-168053 catalyst catalyst -PRKM3 PRKM11 Reaction R-HSA-168053 catalyst catalyst -PRKM3 SAPK2 Reaction R-HSA-168053 catalyst catalyst -PRKM3 SAPK2B Reaction R-HSA-168053 catalyst catalyst -ERK1 ERK1 Complex R-HSA-109844 component component -MAPK3 MAPK3 Complex R-HSA-109844 component component -PRKM3 PRKM3 Complex R-HSA-109844 component component -ERK1 ERK1 Set R-HSA-1268261 member/candidate member/candidate -MAPK3 MAPK3 Set R-HSA-1268261 member/candidate member/candidate -PRKM3 PRKM3 Set R-HSA-1268261 member/candidate member/candidate -MAPK11 MAPK11 Set R-HSA-450307 member/candidate member/candidate -PRKM11 PRKM11 Set R-HSA-450307 member/candidate member/candidate -SAPK2 SAPK2 Set R-HSA-450307 member/candidate member/candidate -SAPK2B SAPK2B Set R-HSA-450307 member/candidate member/candidate -AKT1 PKB Reaction R-HSA-198599 catalyst catalyst -AKT1 RAC Reaction R-HSA-198599 catalyst catalyst -PKB AKT1 Reaction R-HSA-198599 catalyst catalyst -PKB RAC Reaction R-HSA-198599 catalyst catalyst -RAC AKT1 Reaction R-HSA-198599 catalyst catalyst -RAC PKB Reaction R-HSA-198599 catalyst catalyst -AKT1 AKT1 Complex R-HSA-2317310 component component -PKB PKB Complex R-HSA-2317310 component component -RAC RAC Complex R-HSA-2317310 component component -AKT1 AKT1 Set R-HSA-202074 member/candidate member/candidate -PKB PKB Set R-HSA-202074 member/candidate member/candidate 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R-HSA-1433551 member/candidate member/candidate -STAT5A STAT5A Set R-HSA-1433551 member/candidate member/candidate -STAT5 STAT5A Reaction R-HSA-1671691 input input -STAT5A STAT5 Reaction R-HSA-1671691 input input -STAT5 STAT5 Complex R-HSA-507927 component component -STAT5A STAT5A Complex R-HSA-507927 component component -STAT5 STAT5 Set R-HSA-452094 member/candidate member/candidate -STAT5A STAT5A Set R-HSA-452094 member/candidate member/candidate -CRKL CRKL Complex R-HSA-8875574 component component -CRKL CRKL Set R-HSA-381945 member/candidate member/candidate -OK/SW-cl.2 RPS6 Reaction R-HSA-165726 input input -RPS6 OK/SW-cl.2 Reaction R-HSA-165726 input input -OK/SW-cl.2 OK/SW-cl.2 Complex R-HSA-72505 component component -RPS6 RPS6 Complex R-HSA-72505 component component -MAPK11 PRKM11 Reaction R-HSA-450257 input input -MAPK11 SAPK2 Reaction R-HSA-450257 input input -MAPK11 SAPK2B Reaction R-HSA-450257 input input -PRKM11 MAPK11 Reaction R-HSA-450257 input input -PRKM11 SAPK2 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R-HSA-2685700 component component -KIAA0571 KIAA0571 Complex R-HSA-2685700 component component -GAB2 GAB2 Set R-HSA-912533 member/candidate member/candidate -KIAA0571 KIAA0571 Set R-HSA-912533 member/candidate member/candidate