Mercurial > repos > galaxyp > reactome_pathwaymatcher

diff pathwaymatcher.xml @ 1:5d0c44bc354d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 7e04827e48352f6b28cf2e2c93a89a270e5bf026
author galaxyp
date Wed, 04 Jul 2018 04:28:07 -0400
parents f66af2b04a98
children 9a599f278852
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--- a/pathwaymatcher.xml	Wed Jun 20 14:21:10 2018 -0400
+++ b/pathwaymatcher.xml	Wed Jul 04 04:28:07 2018 -0400
@@ -3,7 +3,7 @@
         PathwayMatcher is a software tool to search for pathways related to a list of proteins in Reactome.
     </description>
     <macros>
-       <token name="@PATHWAYMATCHER_VERSION@">1.8</token>
+       <token name="@PATHWAYMATCHER_VERSION@">1.8.1</token>
        <token name="@TOOL_SUBVERSION@">0</token>
        <xml name="input_fasta">
          <param format="fasta" name="input_database" type="data" label="Protein Database"
@@ -87,13 +87,11 @@
                 ## PROTEOFORMS
 
                 #if $s.input_type.input_type_selector == "proteoforms"
-
                     #if $s.input_type.proteoform_match_criteria:
                       -t proteoform -m '${s.input_type.proteoform_match_criteria}' -i '${s.input_type.input_proteoforms}'
                     #else:
                       -t proteoform -i '${s.input_type.input_proteoforms}'
                     #end if
-
                 #end if
 
             #end for