Mercurial > repos > galaxyp > regex_find_replace

comparison regex_tabular.xml @ 1:209b7c5ee9d7 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/regex_find_replace commit 7283e44acd11cd11400a191d3b766885919956b4
author galaxyp
date Thu, 19 Jan 2017 11:26:15 -0500
parents 60d04307b027
children 538933d9fccc
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0:60d04307b027 1:209b7c5ee9d7
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111 111
112 In the replacement pattern, use the special token #{input_name} to insert the input dataset's display name. 112 In the replacement pattern, use the special token #{input_name} to insert the input dataset's display name.
113 The name can be modified by a second find/replace check. Suppose you want to insert the sample id of your dataset, 113 The name can be modified by a second find/replace check. Suppose you want to insert the sample id of your dataset,
114 named **Sample ABC123**, into the dataset itself, which currently contains the lines:: 114 named **Sample ABC123**, into the dataset itself, which currently contains the lines::
115 Data 1 115
116 Data 2 116 Data 1
117 Data 3 117 Data 2
118 Data 3
118 119
119 You can use the following checks:: 120 You can use the following checks::
120 Find Regex: Data
121 Replacement: #{input_name} Data
122 121
123 Find Regex: Sample (\S+) 122 Find Regex: Data
124 Replacement: \1 123 Replacement: #{input_name} Data
124
125 Find Regex: Sample (\S+)
126 Replacement: \1
125 127
126 The result will be:: 128 The result will be::
127 ABC123 Data 1 129
128 ABC123 Data 2 130 ABC123 Data 1
129 ABC123 Data 3 131 ABC123 Data 2
132 ABC123 Data 3
130 133
131 134
132 135
133 Galaxy aggressively escapes input supplied to tools, so if something 136 Galaxy aggressively escapes input supplied to tools, so if something
134 is not working please let us know and we can look into whether this is 137 is not working please let us know and we can look into whether this is