Mercurial > repos > galaxyp > scaffold
diff scaffold.xml @ 1:0d0cbb69a03f draft
Uploaded
author | galaxyp |
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date | Fri, 26 Sep 2014 15:10:34 -0400 |
parents | e9981e6af666 |
children | ef6a14c5f859 |
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--- a/scaffold.xml Thu Jun 20 11:07:47 2013 -0400 +++ b/scaffold.xml Fri Sep 26 15:10:34 2014 -0400 @@ -7,10 +7,10 @@ #if $sample_mode.mode == "full" #set $samples = $sample_mode.samples #for $sample in $samples: -#if $sample.category.specify +#if $sample.category.specify #set $category = $sample.category.name #else -#set $category = $sample.sample_name +#set $category = $sample.sample_name #end if sample:$sample.sample_name mudpit:$sample.mudpit @@ -47,7 +47,7 @@ #end if #if $advanced.specify #if $advanced.output_driver - --output_driver $output_drirver \ + --output_driver $output_driver \ #end if #end if </command> @@ -87,7 +87,7 @@ <param name="name" type="text" label="Category Name" help="" /> </when> </conditional> - </repeat> + </repeat> </when> <when value="sample_per_file"> <param format="t.xml,omx" name="sample_inputs" type="data" multiple="true" label="Input Files" /> @@ -114,7 +114,7 @@ </conditional> </inputs> <outputs> - <data format="xml" name="output_drirver" label="Scaffold Driver for ${on_string}"> + <data format="xml" name="output_driver" label="Scaffold Driver for ${on_string}"> <filter>(advanced['specify'] and advanced["output_driver"])</filter> </data> <data format="sf3" name="output" /> @@ -134,6 +134,6 @@ For the underlying tool, please cite `TODO` -If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-scaffold +If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/scaffold </help> -</tool> \ No newline at end of file +</tool>