diff scaffold.xml @ 1:0d0cbb69a03f draft

Uploaded
author galaxyp
date Fri, 26 Sep 2014 15:10:34 -0400
parents e9981e6af666
children ef6a14c5f859
line wrap: on
line diff
--- a/scaffold.xml	Thu Jun 20 11:07:47 2013 -0400
+++ b/scaffold.xml	Fri Sep 26 15:10:34 2014 -0400
@@ -7,10 +7,10 @@
 #if $sample_mode.mode == "full"
 #set $samples = $sample_mode.samples
 #for $sample in $samples:
-#if $sample.category.specify 
+#if $sample.category.specify
 #set $category = $sample.category.name
 #else
-#set $category = $sample.sample_name 
+#set $category = $sample.sample_name
 #end if
 sample:$sample.sample_name
 mudpit:$sample.mudpit
@@ -47,7 +47,7 @@
     #end if
     #if $advanced.specify
     #if $advanced.output_driver
-    --output_driver $output_drirver \
+    --output_driver $output_driver \
     #end if
     #end if
   </command>
@@ -87,7 +87,7 @@
               <param name="name" type="text" label="Category Name" help="" />
             </when>
           </conditional>
-        </repeat>        
+        </repeat>
       </when>
       <when value="sample_per_file">
         <param format="t.xml,omx" name="sample_inputs" type="data" multiple="true" label="Input Files" />
@@ -114,7 +114,7 @@
     </conditional>
   </inputs>
   <outputs>
-    <data format="xml" name="output_drirver" label="Scaffold Driver for ${on_string}">
+    <data format="xml" name="output_driver" label="Scaffold Driver for ${on_string}">
       <filter>(advanced['specify'] and advanced["output_driver"])</filter>
     </data>
     <data format="sf3" name="output" />
@@ -134,6 +134,6 @@
 
 For the underlying tool, please cite `TODO`
 
-If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-scaffold
+If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/scaffold
   </help>
-</tool>
\ No newline at end of file
+</tool>