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comparison seqPrep.xml @ 2:dd2c54f4a12e draft default tip

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"planemo upload for repository https://github.com/galaxy-works/shed-tools/tree/main/tools/seqprep commit 80ec6fb196df94824c51fc6b0357156182df541e"
author galaxyworks
date Sun, 28 Feb 2021 22:21:38 +0000
parents d1130c342dc9
children
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1:d1130c342dc9 2:dd2c54f4a12e
1 <tool id="seqprep" name="SeqPrep" version="0.2.1"> 1 <tool id="seqprep" name="SeqPrep" version="0.2.2">
2 <description>merge paired end Illumina reads</description> 2 <description>merge paired end Illumina reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.3.2">seqprep</requirement> 4 <requirement type="package" version="1.3.2">seqprep</requirement>
5 <requirement type="package" version="3.7">python</requirement> 5 <requirement type="package" version="3.7">python</requirement>
6 </requirements> 6 </requirements>
98 #end if 98 #end if
99 && zcat -f one.gz > '$one' 99 && zcat -f one.gz > '$one'
100 && zcat -f two.gz > '$two' 100 && zcat -f two.gz > '$two'
101 #if $save_discarded 101 #if $save_discarded
102 && zcat -f three.gz > '$three' 102 && zcat -f three.gz > '$three'
103 && zcat -f found.gz > '$four' 103 && zcat -f four.gz > '$four'
104 #end if 104 #end if
105 ]]></command> 105 ]]></command>
106 <inputs> 106 <inputs>
107 <param name="f" type="data" format="fastq,fastqillumina,fastqsanger,fastqsolexa" label="Forward reads" /> 107 <param name="f" type="data" format="fastq,fastqillumina,fastqsanger,fastqsolexa" label="Forward reads" />
108 <param name="r" type="data" format="fastq,fastqillumina,fastqsanger,fastqsolexa" label="Reverse reads" /> 108 <param name="r" type="data" format="fastq,fastqillumina,fastqsanger,fastqsolexa" label="Reverse reads" />