Mercurial > repos > galaxyworks > seqprep
view seqlens.py @ 0:f25733322c54 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit 85099b149e64f24060848cb04c680e0ac8061d76"
author | galaxyworks |
---|---|
date | Fri, 26 Feb 2021 04:26:20 +0000 |
parents | |
children |
line wrap: on
line source
#!/usr/bin/env python from collections import defaultdict from operator import itemgetter from sys import stdin seqlens = defaultdict(int) next_line_seq = False count = 0 for line in stdin: count += 1 if line.startswith("@"): count = 0 next_line_seq = True if next_line_seq and count == 1: next_line_seq = False seqlens[len(line)] += 1 for (length, count) in sorted(seqlens.items(), key=itemgetter(0), reverse=True): print("%d\t%d" % (length, count))