# HG changeset patch
# User galaxyworks
# Date 1614549146 0
# Node ID d1130c342dc9758d6dee4a7439514bd22325b45e
# Parent  f25733322c54e2c05f29cad1ab5aca5637d60f61
"planemo upload for repository https://github.com/galaxy-works/shed-tools/tree/main/tools/seqprep commit f933f2d9276c45dbcd5e34a4e6c27c1f0029d016"

diff -r f25733322c54 -r d1130c342dc9 seqPrep.xml
--- a/seqPrep.xml	Fri Feb 26 04:26:20 2021 +0000
+++ b/seqPrep.xml	Sun Feb 28 21:52:26 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="seqprep" name="SeqPrep" version="0.2.0">
+<tool id="seqprep" name="SeqPrep" version="0.2.1">
   <description>merge paired end Illumina reads</description>
   <requirements>
     <requirement type="package" version="1.3.2">seqprep</requirement>
@@ -91,16 +91,16 @@
       -n $merge.n
       #end if
       -s merge.gz
+      && zcat -f merge.gz > '$s'
       #if $merge.lengths_select
-      && zcat -f merge.gz > '$s'
-      && cat '$s' | python '$__tool_directory__/seqlens.py' > '$s_lengths'
+        && cat '$s' | python '$__tool_directory__/seqlens.py' > '$s_lengths'
       #end if
-      && zcat -f one.gz > '$one'
-      && zcat -f two.gz > '$two'
-      #if $save_discarded
+    #end if
+    && zcat -f one.gz > '$one'
+    && zcat -f two.gz > '$two'
+    #if $save_discarded
       && zcat -f three.gz > '$three'
       && zcat -f found.gz > '$four'
-      #end if
     #end if
   ]]></command>
   <inputs>