Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/DeleteTool1.py~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 import os
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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2
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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3 galaxyhome=os.environ.get('GALAXY_HOME')
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4
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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5 f1=open(galaxyhome+'/tool_conf.xml','r')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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6 f1.seek(0,0)
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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8 f3=open(galaxyhome+'/tools/WebServiceToolWorkflow/DeleteTool2.xml','w')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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9 f3.seek(0,0)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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11 f3.write('<tool id="DeleteTool3" name="Step 2">\n')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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12 f3.write(' <description> :Choose Web Service Tool to be deleted </description>\n')
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14 f3.write(' <command interpreter="python">\n DeleteTool2.py \n'+' $output \n $tool \n </command>\n')
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15 f3.write(' <inputs>\n <param name ="tool" type ="select" label =" Select the Web service tool you want to delete, by its order number (position in the Web Service Tools section on the left) " help="see tip below">\n')
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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18 ##first copy everything upto WebServiceTool1.xml into another file f2
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19 line = f1.readline()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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20 lineStripped=line.lstrip()
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21
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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22 while not lineStripped == '<section name="Web Service Tools" id="WebServices">\n':
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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23 line = f1.readline()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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24 lineStripped = line.lstrip()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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25 else:
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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26 print line
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27
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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28 i=0
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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29 while not lineStripped == '</section>\n':
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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30 i=i+1
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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31 line = f1.readline()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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32 lineStripped = line.lstrip()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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33 else:
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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34 print line
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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35
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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36 j=0
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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37 while not j==i-1:
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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38 j=j+1
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39 f3.write(' <option value = "client_'+ str(j) + '.xml"> Web Service Tools: Tool '+ str(j) + '</option>\n')
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40 else:
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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41 print i
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42
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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43 f3.write(' </param>\n </inputs>\n')
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44 f3.write(' <outputs>\n <data format="tabular" name="output" />\n </outputs>\n')
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45 f3.write(' <help>\n </help>\n</tool>')
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