Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/WebServiceTool2.py~ @ 0:d5cd409b8a18 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
1 import warnings
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
2 import platform
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
3 import os,sys
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
4 from generateClient import *
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
5 from generateClient1 import *
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
6
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
7 ##input : wadl/wsdl/sawadl-url, method name
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
8 ##generate a client as tool for Galaxy:
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
9 #1. Add client xml address to Galaxy tool-conf.xml file - call edit_tool_conf.py
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
10 #2. Generate client xml file - call generate client.py
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
11
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
12 url = sys.argv[2]
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
13 urllist = url.split('.')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
14
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
15 #f=open(sys.argv[5],'w')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
16 #f.write('url: ' + url + '\t')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
17 #f.write('reached here 1')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
18 #f.close()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
19
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
20 clientGenerator = ClientGenerator(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
21 clientGenerator1 = ClientGenerator1(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
22
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
23 if urllist[len(urllist)-1]=='wadl' or urllist[len(urllist)-1]=='WADL':
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
24 javahome = os.environ.get('JAVA_HOME')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
25 galaxyhome=os.environ.get('GALAXY_HOME')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
26 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/bin'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
27 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/lib/'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
28 machine = platform.machine()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
29
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
30 if machine == 'x86_64' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
31 print 'a'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
32 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
33 elif machine == 'i686' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
34 print 'b'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
35 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
36 elif machine == 'sun4u' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
37 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
38 else :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
39 print 'c'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
40 System.exit("Could not identify machine, please specify path to libjvm.so")
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
41 clientGenerator1.wadlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
42 clientGenerator.wadlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
43
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
44 elif urllist[len(urllist)-1]=='wsdl' or urllist[len(urllist)-1]=='WSDL':
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
45 clientGenerator.wsdlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
46 clientGenerator1.wsdlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
47 elif urllist[len(urllist)-1]=='sawadl' or urllist[len(urllist)-1]=='SAWADL':
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
48
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
49 javahome = os.environ.get('JAVA_HOME')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
50 galaxyhome=os.environ.get('GALAXY_HOME')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
51 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/lib/SAWADLParser/bin'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
52 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/lib/'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
53 machine = platform.machine()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
54
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
55 if machine == 'x86_64' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
56 print 'a'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
57 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
58 elif machine == 'i686' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
59 print 'b'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
60 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
61 elif machine == 'sun4u' :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
62 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
63 else :
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
64 print 'c'
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
65 System.exit("Could not identify machine, please specify path to libjvm.so")
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
66
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
67 #f=open(sys.argv[5],'w')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
68 #f.write('reached here 2 \t')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
69 #f.close()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
70
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
71 clientGenerator.sawadlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
72 clientGenerator1.sawadlClient()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
73 #f=open(sys.argv[5],'w')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
74 #f.write('reached here 3')
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
75 #f.close()
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
76
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
77
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
78
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
79
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
80
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
81
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
82