Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/clients/client_5.xml~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="client_51" name="genesbymolecularweight">
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2 <description> Client for method: genesbymolecularweight , Web service: http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.wadl </description>
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3 <command interpreter="python">
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4 #if $cond_source.optional_param_source=="no" #client_1.py $output http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.xml organism $param0 min_molecular_weight $param1 max_molecular_weight $param2#else #client_1.py $output http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.xml organism $param0 min_molecular_weight $param1 max_molecular_weight $param2 o-fields $cond_source.param3 o-tables $cond_source.param4#end if
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5 </command>
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6 <inputs>
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7 <param name="param0" type="select" label="organism" help="see tip below">
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8 <option value="Entamoeba**dispar" >Entamoeba dispar</option>
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9 <option value="Entamoeba**histolytica" >Entamoeba histolytica</option>
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10 <option value="Entamoeba**invadens" >Entamoeba invadens</option>
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11 <option value="Cryptosporidium**parvum" >Cryptosporidium parvum</option>
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12 <option value="Cryptosporidium**hominis" >Cryptosporidium hominis</option>
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13 <option value="Cryptosporidium**muris" >Cryptosporidium muris</option>
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14 <option value="Giardia**Assemblage**A**isolate**WB" >Giardia Assemblage A isolate WB</option>
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15 <option value="Giardia**Assemblage**B**isolate**GS" >Giardia Assemblage B isolate GS</option>
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16 <option value="Giardia**Assemblage**E**isolate**P15" >Giardia Assemblage E isolate P15</option>
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17 <option value="Encephalitozoon**cuniculi" >Encephalitozoon cuniculi</option>
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18 <option value="Encephalitozoon**intestinalis" >Encephalitozoon intestinalis</option>
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19 <option value="Plasmodium**falciparum" >Plasmodium falciparum</option>
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20 <option value="Plasmodium**vivax" >Plasmodium vivax</option>
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21 <option value="Plasmodium**yoelii" >Plasmodium yoelii</option>
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22 <option value="Plasmodium**berghei" >Plasmodium berghei</option>
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23 <option value="Plasmodium**chabaudi" >Plasmodium chabaudi</option>
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24 <option value="Plasmodium**knowlesi" >Plasmodium knowlesi</option>
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25 <option value="Toxoplasma**gondii" >Toxoplasma gondii</option>
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26 <option value="Neospora**caninum" >Neospora caninum</option>
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27 <option value="Trichomonas**vaginalis" >Trichomonas vaginalis</option>
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28 <option value="Trypanosoma**cruzi" >Trypanosoma cruzi</option>
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29 <option value="Leishmania**braziliensis" >Leishmania braziliensis</option>
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30 <option value="Leishmania**infantum" >Leishmania infantum</option>
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31 <option value="Leishmania**major" >Leishmania major</option>
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32 <option value="Leishmania**mexicana" >Leishmania mexicana</option>
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33 <option value="Trypanosoma**brucei" >Trypanosoma brucei</option>
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34 <option value="Trypanosoma**congolense" >Trypanosoma congolense</option>
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35 <option value="Trypanosoma**vivax" >Trypanosoma vivax</option>
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36 </param>
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37 <param format="text" size = "150" name = "param1" type="text" label="min_molecular_weight" help="see tip below" />
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38 <param format="text" size = "150" name = "param2" type="text" label="max_molecular_weight" help="see tip below" />
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39
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40 <conditional name="cond_source">
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41 <param name="optional_param_source" type="select" label="Help">
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42 <option value="no" selected="true">no</option>
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43 <option value="yes">yes</option>
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44 </param>
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45 <when value="no">
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46 </when><when value="yes">
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47 <param name="param3" type="select" label="o-fields" help="see tip below">
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48 <option value="all" >all</option>
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49 <option value="none" selected="true">none</option>
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50 <option value="primary_key" >primary_key</option>
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51 <option value="formatted_gene_id" >formatted_gene_id</option>
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52 <option value="external_db_name" >external_db_name</option>
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53 <option value="sequence_id" >sequence_id</option>
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54 <option value="chromosome" >chromosome</option>
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55 <option value="location_text" >location_text</option>
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56 <option value="strand" >strand</option>
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57 <option value="gene_type" >gene_type</option>
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58 <option value="exon_count" >exon_count</option>
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59 <option value="transcript_length" >transcript_length</option>
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60 <option value="cds_length" >cds_length</option>
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61 <option value="product" >product</option>
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62 <option value="protein_length" >protein_length</option>
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63 <option value="tm_count" >tm_count</option>
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64 <option value="molecular_weight" >molecular_weight</option>
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65 <option value="isoelectric_point" >isoelectric_point</option>
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66 <option value="ec_numbers_string" >ec_numbers_string</option>
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67 <option value="ortholog_number" >ortholog_number</option>
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68 <option value="paralog_number" >paralog_number</option>
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69 <option value="orthomcl_name" >orthomcl_name</option>
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70 <option value="signalp_scores" >signalp_scores</option>
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71 <option value="signalp_peptide" >signalp_peptide</option>
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72 <option value="ann_go_function" >ann_go_function</option>
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73 <option value="ann_go_process" >ann_go_process</option>
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74 <option value="ann_go_component" >ann_go_component</option>
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75 <option value="pred_go_function" >pred_go_function</option>
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76 <option value="pred_go_process" >pred_go_process</option>
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77 <option value="pred_go_component" >pred_go_component</option>
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78 <option value="organism" >organism</option>
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79 <option value="protein_sequence" >protein_sequence</option>
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80 <option value="transcript_sequence" >transcript_sequence</option>
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81 <option value="cds" >cds</option>
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82 <option value="wdk_weight" >wdk_weight</option>
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83 </param>
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84 <param name="param4" type="select" label="o-tables" help="see tip below">
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85 <option value="all" >all</option>
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86 <option value="none" selected="true">none</option>
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87 <option value="SNPs" >SNPs</option>
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88 <option value="GeneModelDump" >GeneModelDump</option>
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89 <option value="InterPro" >InterPro</option>
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90 <option value="TMHMM" >TMHMM</option>
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91 <option value="LowComplexity" >LowComplexity</option>
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92 <option value="SignalP" >SignalP</option>
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93 <option value="BlastP" >BlastP</option>
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94 <option value="Genbank" >Genbank</option>
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95 <option value="SageTags" >SageTags</option>
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96 <option value="Notes" >Notes</option>
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97 <option value="UserComments" >UserComments</option>
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98 <option value="CommunityExpComments" >CommunityExpComments</option>
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99 <option value="EcNumber" >EcNumber</option>
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100 <option value="MassSpec" >MassSpec</option>
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101 <option value="GoTerms" >GoTerms</option>
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102 <option value="Aliases" >Aliases</option>
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103 <option value="Phenotype" >Phenotype</option>
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104 <option value="Y2hInteractions" >Y2hInteractions</option>
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105 <option value="Orthologs" >Orthologs</option>
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106 <option value="MetabolicPathways" >MetabolicPathways</option>
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107 <option value="TaskComments" >TaskComments</option>
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108 <option value="ArrayElements" >ArrayElements</option>
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109 <option value="TwoChannelDiffExpr" >TwoChannelDiffExpr</option>
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110 <option value="ProteinExpression" >ProteinExpression</option>
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111 <option value="Mr4Reagents" >Mr4Reagents</option>
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112 <option value="ProteinDatabase" >ProteinDatabase</option>
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113 <option value="GeneLinkouts" >GeneLinkouts</option>
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114 <option value="3dPreds" >3dPreds</option>
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115 <option value="PdbSimilarities" >PdbSimilarities</option>
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116 <option value="Epitopes" >Epitopes</option>
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117 <option value="IsolateOverlap" >IsolateOverlap</option>
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118 </param>
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119 </when>
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120 </conditional></inputs>
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121 <outputs>
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122 <data format="tabular" name="output" />
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123 </outputs>
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124 <help>
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125
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126 .. class:: infomark
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127
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128 **TIP:** organism type is xsd:string
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129
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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130 .. class:: infomark
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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131
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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132 **TIP:** min_molecular_weight type is xsd:string
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133
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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134 .. class:: infomark
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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135
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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136 **TIP:** max_molecular_weight type is xsd:string
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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137 </help>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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138 </tool>