Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/workflowclients/client_5.xml~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="client_5" name="getDDBJEntry ">
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2 <description> Client for method: getDDBJEntry , Web service: http://cs.uga.edu/~ganjoo/galaxy/DDBJGetEntry.wadl </description>
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3 <command interpreter="python">
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4 client_1.py
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5 #if $cond_source.optional_param_source=="no":
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6 $output
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7 http://www.xml.nig.ac.jp/rest/Invoke
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8 service
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9 #if $source0.source0_source=="user":
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10 $source0.user_param0
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11 #else:
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12 $source0.cached_param0
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13 #end if
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14 method
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15 #if $source1.source1_source=="user":
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16 $source1.user_param1
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17 #else:
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18 $source1.cached_param1
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19 #end if
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20 accession
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21 #if $source2.source2_source=="user":
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22 $source2.user_param2
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23 #else:
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24 $source2.cached_param2
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25 #end if
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26 #else:
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27 $output
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28 http://www.xml.nig.ac.jp/rest/Invoke
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29 service
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30 #if $source0.source0_source=="user":
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31 $source0.user_param0
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32 #else:
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33 $source0.cached_param0
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34 #end if
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35 method
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36 #if $source1.source1_source=="user":
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37 $source1.user_param1
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38 #else:
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39 $source1.cached_param1
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40 #end if
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41 accession
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42 #if $source2.source2_source=="user":
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43 $source2.user_param2
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44 #else:
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45 fileInput
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46 $source2.cached_param2
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47 #end if
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48 #end if
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49 </command>
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50 <inputs>
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51 <conditional name="source0">
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52 <param name="source0_source" type="select" label="Service to be invoked Source">
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53 <option value="cached" selected="true">Param value will be taken from previous step</option>
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54 <option value="user">User will enter the param value</option>
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55 </param>
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56 <when value="user">
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57 <param name="user_param0" type="select" label="Select Service to be invoked " help="see tip below">
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58 <option value="GetEntry" >GetEntry</option>
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59 </param>
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60 </when>
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61 <when value="cached">
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62 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter Service to be invoked "/>
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63 </when></conditional><conditional name="source1">
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64 <param name="source1_source" type="select" label="Method to be used Source">
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65 <option value="cached" selected="true">Param value will be taken from previous step</option>
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66 <option value="user">User will enter the param value</option>
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67 </param>
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68 <when value="user">
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69 <param name="user_param1" type="select" label="Select Method to be used" help="see tip below">
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70 <option value="getDDBJEntry" selected="true">getDDBJEntry</option>
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71 </param>
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72 </when>
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73 <when value="cached">
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74 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter Method to be used"/>
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75 </when></conditional><conditional name="source2">
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76 <param name="source2_source" type="select" label="DDBJ accession number Source">
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77 <option value="cached" selected="true">Param value will be taken from previous step</option>
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78 <option value="user">User will enter the param value</option>
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79 </param>
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80 <when value="user">
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81 <param format="text" size = "150" name = "user_param2" type="text" label="Enter DDBJ accession number" help="see tip below" />
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82 </when>
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83 <when value="cached">
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84 <param name = "cached_param2" type="data" format="tabular" label="Choose the step from which to get the parameter DDBJ accession number"/>
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85 </when></conditional>
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86
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87 <conditional name="cond_source">
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88 <param name="optional_param_source" type="select" label="Display Additional Parameters">
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89 <option value="no" selected="true">no</option>
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90 <option value="yes">yes</option>
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91 </param>
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92 <when value="no">
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93 </when>
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94 <when value="yes">
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95 </when>
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96 </conditional>
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97 </inputs>
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98 <outputs>
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99 <data format="tabular" name="output" />
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100 </outputs>
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101 <help>
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102
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103 .. class:: infomark
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104
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105 **TIP:** Service to be invoked type is xsd:string
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106
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107 .. class:: infomark
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108
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109 **TIP:** Method to be used type is xsd:string
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110
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111 .. class:: infomark
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112
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113 **TIP:** DDBJ accession number type is xsd:string
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114 </help>
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115 </tool>