Mercurial > repos > ganjoo > webservice_toolsuite
annotate WebServiceToolWorkflow/workflowclients/client_7.xml~ @ 0:d5cd409b8a18 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | ganjoo |
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date | Tue, 07 Jun 2011 18:00:50 -0400 |
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rev | line source |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="client_7" name="runclustalW2 "> |
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2 <description> Client for method: runclustalW2 , Web service: http://om.cs.uga.edu/demo/clusatlW2.wadl </description> |
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3 <command interpreter="python"> |
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4 #client_1.py |
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5 $output |
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6 http://www.ebi.ac.uk/Tools/services/restclustalw2/run |
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7 email |
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8 #if $source0.source0_source=="user" $source0.user_param0 #else $source0.cached_param0 #end if |
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9 #if $cond_source.optional_param_source=="yes" type |
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10 #if $cond_source.source1.source1_source=="user" $cond_source.source1.user_param1 #else $cond_source.source1.cached_param1 #end if |
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11 title |
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12 #if $cond_source.source2.source2_source=="user" $cond_source.source2.user_param2 #else $cond_source.source2.cached_param2 #end if |
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13 output |
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14 #if $cond_source.source3.source3_source=="user" $cond_source.source3.user_param3 #else $cond_source.source3.cached_param3 #end if |
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15 alignments |
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16 #if $cond_source.source4.source4_source=="user" $cond_source.source4.user_param4 #else $cond_source.source4.cached_param4 #end if |
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17 outorder |
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18 #if $cond_source.source5.source5_source=="user" $cond_source.source5.user_param5 #else $cond_source.source5.cached_param5 #end if |
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19 sequence |
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20 #if $cond_source.source6.source6_source=="user" $cond_source.source6.user_param6 #else $cond_source.source6.cached_param6 #end if |
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21 ktup |
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22 #if $cond_source.source7.source7_source=="user" $cond_source.source7.user_param7 #else $cond_source.source7.cached_param7 #end if |
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23 window |
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24 #if $cond_source.source8.source8_source=="user" $cond_source.source8.user_param8 #else $cond_source.source8.cached_param8 #end if |
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25 score |
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26 #if $cond_source.source9.source9_source=="user" $cond_source.source9.user_param9 #else $cond_source.source9.cached_param9 #end if |
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27 topdiag |
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28 #if $cond_source.source10.source10_source=="user" $cond_source.source10.user_param10 #else $cond_source.source10.cached_param10 #end if |
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29 pairgap |
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30 #if $cond_source.source11.source11_source=="user" $cond_source.source11.user_param11 #else $cond_source.source11.cached_param11 #end if |
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31 pwmatrix |
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32 #if $cond_source.source12.source12_source=="user" $cond_source.source12.user_param12 #else $cond_source.source12.cached_param12 #end if |
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33 pwdnamatrix |
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34 #if $cond_source.source13.source13_source=="user" $cond_source.source13.user_param13 #else $cond_source.source13.cached_param13 #end if |
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35 pwgapopen |
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36 #if $cond_source.source14.source14_source=="user" $cond_source.source14.user_param14 #else $cond_source.source14.cached_param14 #end if |
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37 pwgapext |
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38 #if $cond_source.source15.source15_source=="user" $cond_source.source15.user_param15 #else $cond_source.source15.cached_param15 #end if |
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39 matrix |
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40 #if $cond_source.source16.source16_source=="user" $cond_source.source16.user_param16 #else $cond_source.source16.cached_param16 #end if |
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41 dnamatrix |
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42 #if $cond_source.source17.source17_source=="user" $cond_source.source17.user_param17 #else $cond_source.source17.cached_param17 #end if |
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43 gapopen |
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44 #if $cond_source.source18.source18_source=="user" $cond_source.source18.user_param18 #else $cond_source.source18.cached_param18 #end if |
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45 noendgaps |
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46 #if $cond_source.source19.source19_source=="user" $cond_source.source19.user_param19 #else $cond_source.source19.cached_param19 #end if |
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47 gapext |
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48 #if $cond_source.source20.source20_source=="user" $cond_source.source20.user_param20 #else $cond_source.source20.cached_param20 #end if |
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49 gapext |
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50 #if $cond_source.source21.source21_source=="user" $cond_source.source21.user_param21 #else $cond_source.source21.cached_param21 #end if |
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51 iteration |
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52 #if $cond_source.source22.source22_source=="user" $cond_source.source22.user_param22 #else $cond_source.source22.cached_param22 #end if |
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53 numiter |
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54 #if $cond_source.source23.source23_source=="user" $cond_source.source23.user_param23 #else $cond_source.source23.cached_param23 #end if |
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55 #else |
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56 #end if |
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57 </command> |
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58 <inputs> |
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59 <conditional name="source0"> |
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60 <param name="source0_source" type="select" label="id Source"> |
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61 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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62 <option value="user">User will enter the param value</option> |
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63 </param> |
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64 <when value="user"> |
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65 <param format="text" size = "150" name = "user_param0" type="text" label="Enter email" help="see tip below" /> |
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66 </when> |
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67 <when value="cached"> |
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68 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter id"/> |
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69 </when></conditional> <conditional name="cond_source"> |
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70 <param name="optional_param_source" type="select" label="Display Additional Parameters"> |
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71 <option value="no" selected="true">no</option> |
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72 <option value="yes">yes</option> |
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73 </param> |
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74 <when value="no"> |
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75 </when> |
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76 <when value="yes"> |
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77 |
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78 <conditional name="source1"> |
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79 <param name="source1_source" type="select" label="type Source"> |
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80 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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81 <option value="user">User will enter the param value</option> |
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82 </param> |
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83 <when value="user"><param name="user_param1" type="select" label="Select type" help="see tip below"> |
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84 <option value="protein" selected="true">protein</option> |
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85 <option value="dna" >dna</option> |
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86 </param> |
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87 </when> |
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88 <when value="cached"> |
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89 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter type"/> |
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90 </when></conditional> |
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91 |
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92 <conditional name="source2"> |
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93 <param name="source2_source" type="select" label="title Source"> |
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94 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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95 <option value="user">User will enter the param value</option> |
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96 </param> |
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97 <when value="user"><param format="text" size = "150" name = "user_param2" type="text" label="Enter title" help="see tip below" /> |
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98 </when> |
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99 <when value="cached"> |
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100 <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter title"/> |
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101 </when></conditional> |
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102 |
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103 <conditional name="source3"> |
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104 <param name="source3_source" type="select" label="output Source"> |
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105 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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106 <option value="user">User will enter the param value</option> |
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107 </param> |
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108 <when value="user"><param name="user_param3" type="select" label="Select output" help="see tip below"> |
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109 <option value="aln1" selected="true">aln1</option> |
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110 <option value="aln2" >aln2</option> |
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111 <option value="gcg" >gcg</option> |
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112 <option value="phylip" >phylip</option> |
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113 <option value="nexus" >nexus</option> |
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114 <option value="pir" >pir</option> |
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115 <option value="gde" >gde</option> |
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116 <option value="fasta" >fasta</option> |
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117 </param> |
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118 </when> |
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119 <when value="cached"> |
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120 <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter output"/> |
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121 </when></conditional> |
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122 |
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123 <conditional name="source4"> |
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124 <param name="source4_source" type="select" label="alignments Source"> |
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125 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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126 <option value="user">User will enter the param value</option> |
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127 </param> |
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128 <when value="user"><param name="user_param4" type="select" label="Select alignments" help="see tip below"> |
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129 <option value="slow" selected="true">slow</option> |
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130 <option value="fast" >fast</option> |
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131 </param> |
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132 </when> |
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133 <when value="cached"> |
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134 <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter alignments"/> |
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135 </when></conditional> |
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136 |
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137 <conditional name="source5"> |
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138 <param name="source5_source" type="select" label="outorder Source"> |
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139 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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140 <option value="user">User will enter the param value</option> |
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141 </param> |
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142 <when value="user"><param name="user_param5" type="select" label="Select outorder" help="see tip below"> |
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143 <option value="aligned" selected="true">aligned</option> |
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144 <option value="input" >input</option> |
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145 </param> |
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146 </when> |
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147 <when value="cached"> |
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148 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter outorder"/> |
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149 </when></conditional> |
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150 |
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151 <conditional name="source6"> |
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152 <param name="source6_source" type="select" label="sequence Source"> |
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153 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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154 <option value="user">User will enter the param value</option> |
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155 </param> |
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156 <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter sequence" help="see tip below" /> |
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157 </when> |
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158 <when value="cached"> |
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159 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter sequence"/> |
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160 </when></conditional> |
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161 |
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162 <conditional name="source7"> |
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163 <param name="source7_source" type="select" label="ktup Source"> |
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164 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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165 <option value="user">User will enter the param value</option> |
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166 </param> |
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167 <when value="user"><param name="user_param7" type="select" label="Select ktup" help="see tip below"> |
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168 <option value="1" selected="true">1</option> |
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169 <option value="2" >2</option> |
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170 <option value="3" >3</option> |
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171 <option value="4" >4</option> |
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172 <option value="5" >5</option> |
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173 </param> |
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174 </when> |
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175 <when value="cached"> |
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176 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter ktup"/> |
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177 </when></conditional> |
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178 |
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179 <conditional name="source8"> |
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180 <param name="source8_source" type="select" label="window Source"> |
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181 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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182 <option value="user">User will enter the param value</option> |
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183 </param> |
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184 <when value="user"><param name="user_param8" type="select" label="Select window" help="see tip below"> |
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185 <option value="10" >10</option> |
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186 <option value="9" >9</option> |
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187 <option value="8" >8</option> |
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188 <option value="7" >7</option> |
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189 <option value="6" >6</option> |
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190 <option value="5" selected="true">5</option> |
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191 <option value="4" >4</option> |
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192 <option value="3" >3</option> |
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193 <option value="2" >2</option> |
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194 <option value="1" >1</option> |
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195 <option value="0" >0</option> |
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196 </param> |
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197 </when> |
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198 <when value="cached"> |
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199 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter window"/> |
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200 </when></conditional> |
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201 |
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202 <conditional name="source9"> |
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203 <param name="source9_source" type="select" label="score Source"> |
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204 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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205 <option value="user">User will enter the param value</option> |
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206 </param> |
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207 <when value="user"><param name="user_param9" type="select" label="Select score" help="see tip below"> |
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208 <option value="percent" selected="true">percent</option> |
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209 <option value="absolute" >absolute</option> |
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210 </param> |
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211 </when> |
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212 <when value="cached"> |
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213 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter score"/> |
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214 </when></conditional> |
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|
215 |
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216 <conditional name="source10"> |
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217 <param name="source10_source" type="select" label="topdiag Source"> |
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218 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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219 <option value="user">User will enter the param value</option> |
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220 </param> |
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221 <when value="user"><param name="user_param10" type="select" label="Select topdiag" help="see tip below"> |
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222 <option value="10" >10</option> |
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223 <option value="9" >9</option> |
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224 <option value="8" >8</option> |
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225 <option value="7" >7</option> |
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226 <option value="6" >6</option> |
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227 <option value="5" selected="true">5</option> |
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228 <option value="4" >4</option> |
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229 <option value="3" >3</option> |
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230 <option value="2" >2</option> |
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231 <option value="1" >1</option> |
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232 </param> |
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233 </when> |
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234 <when value="cached"> |
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235 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter topdiag"/> |
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236 </when></conditional> |
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237 |
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238 <conditional name="source11"> |
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239 <param name="source11_source" type="select" label="pairgap Source"> |
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240 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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241 <option value="user">User will enter the param value</option> |
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242 </param> |
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243 <when value="user"><param name="user_param11" type="select" label="Select pairgap" help="see tip below"> |
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244 <option value="1" >1</option> |
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245 <option value="2" >2</option> |
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246 <option value="3" selected="true">3</option> |
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247 <option value="4" >4</option> |
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248 <option value="5" >5</option> |
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249 <option value="10" >10</option> |
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250 <option value="25" >25</option> |
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251 <option value="50" >50</option> |
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252 <option value="100" >100</option> |
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253 <option value="250" >250</option> |
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254 <option value="500" >500</option> |
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255 </param> |
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256 </when> |
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257 <when value="cached"> |
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258 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter pairgap"/> |
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259 </when></conditional> |
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260 |
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261 <conditional name="source12"> |
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262 <param name="source12_source" type="select" label="pwmatrix Source"> |
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263 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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264 <option value="user">User will enter the param value</option> |
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265 </param> |
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266 <when value="user"><param name="user_param12" type="select" label="Select pwmatrix" help="see tip below"> |
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267 <option value="blosum" >blosum</option> |
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268 <option value="pam" >pam</option> |
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269 <option value="gonnet" selected="true">gonnet</option> |
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270 <option value="id" >id</option> |
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271 </param> |
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272 </when> |
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273 <when value="cached"> |
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274 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter pwmatrix"/> |
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275 </when></conditional> |
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276 |
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277 <conditional name="source13"> |
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|
278 <param name="source13_source" type="select" label="pwdnamatrix Source"> |
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279 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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280 <option value="user">User will enter the param value</option> |
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|
281 </param> |
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|
282 <when value="user"><param name="user_param13" type="select" label="Select pwdnamatrix" help="see tip below"> |
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283 <option value="iub" selected="true">iub</option> |
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284 <option value="clustalw" >clustalw</option> |
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285 </param> |
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|
286 </when> |
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|
287 <when value="cached"> |
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|
288 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter pwdnamatrix"/> |
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289 </when></conditional> |
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|
290 |
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|
291 <conditional name="source14"> |
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|
292 <param name="source14_source" type="select" label="pwgapopen Source"> |
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293 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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294 <option value="user">User will enter the param value</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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295 </param> |
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296 <when value="user"><param name="user_param14" type="select" label="Select pwgapopen" help="see tip below"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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297 <option value="100" >100</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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298 <option value="50" >50</option> |
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299 <option value="25" >25</option> |
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|
300 <option value="10" selected="true">10</option> |
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301 <option value="5" >5</option> |
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302 <option value="2" >2</option> |
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303 <option value="1" >1</option> |
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304 </param> |
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|
305 </when> |
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changeset
|
306 <when value="cached"> |
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|
307 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter pwgapopen"/> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
308 </when></conditional> |
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changeset
|
309 |
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|
310 <conditional name="source15"> |
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changeset
|
311 <param name="source15_source" type="select" label="pwgapext Source"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
312 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
313 <option value="user">User will enter the param value</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
314 </param> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
315 <when value="user"><param name="user_param15" type="select" label="Select pwgapext" help="see tip below"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
316 <option value="0.05" >0.05</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
317 <option value="0.1" selected="true">0.1</option> |
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318 <option value="0.5" >0.5</option> |
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|
319 <option value="1.0" >1.0</option> |
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320 <option value="2.5" >2.5</option> |
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321 <option value="5.0" >5.0</option> |
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|
322 <option value="7.5" >7.5</option> |
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323 <option value="10.0" >10.0</option> |
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|
324 </param> |
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changeset
|
325 </when> |
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|
326 <when value="cached"> |
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|
327 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter pwgapext"/> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
328 </when></conditional> |
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changeset
|
329 |
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|
330 <conditional name="source16"> |
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|
331 <param name="source16_source" type="select" label="matrix Source"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
332 <option value="cached" selected="true">Param value will be taken from previous step</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
333 <option value="user">User will enter the param value</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
334 </param> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
335 <when value="user"><param name="user_param16" type="select" label="Select matrix" help="see tip below"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
336 <option value="blosum" >blosum</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
337 <option value="pam" >pam</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
338 <option value="gonnet" selected="true">gonnet</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
339 <option value="id" >id</option> |
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|
340 </param> |
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changeset
|
341 </when> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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parents:
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changeset
|
342 <when value="cached"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
343 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter matrix"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
344 </when></conditional> |
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changeset
|
345 |
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|
346 <conditional name="source17"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
347 <param name="source17_source" type="select" label="dnamatrix Source"> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
348 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
349 <option value="user">User will enter the param value</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
350 </param> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
351 <when value="user"><param name="user_param17" type="select" label="Select dnamatrix" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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diff
changeset
|
352 <option value="iub" selected="true">iub</option> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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changeset
|
353 <option value="clustalw" >clustalw</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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diff
changeset
|
354 </param> |
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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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|
355 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
356 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
357 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter dnamatrix"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
358 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
359 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
360 <conditional name="source18"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
361 <param name="source18_source" type="select" label="gapopen Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
362 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
363 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
364 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
365 <when value="user"><param name="user_param18" type="select" label="Select gapopen" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
366 <option value="100" >100</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
367 <option value="50" >50</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
368 <option value="25" >25</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
369 <option value="10" selected="true">10</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
370 <option value="5" >5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
371 <option value="2" >2</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
372 <option value="1" >1</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
373 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
374 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
375 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
376 <param name = "cached_param18" type="data" label="Choose the step from which to get the parameter gapopen"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
377 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
378 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
379 <conditional name="source19"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
380 <param name="source19_source" type="select" label="noendgaps Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
381 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
382 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
383 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
384 <when value="user"><param name="user_param19" type="select" label="Select noendgaps" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
385 <option value="false" selected="true">false</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
386 <option value="true" >true</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
387 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
388 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
389 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
390 <param name = "cached_param19" type="data" label="Choose the step from which to get the parameter noendgaps"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
391 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
392 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
393 <conditional name="source20"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
394 <param name="source20_source" type="select" label="gapext Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
395 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
396 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
397 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
398 <when value="user"><param name="user_param20" type="select" label="Select gapext" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
399 <option value="0.05" >0.05</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
400 <option value="0.20" selected="true">0.20</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
401 <option value="0.5" >0.5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
402 <option value="1.0" >1.0</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
403 <option value="2.5" >2.5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
404 <option value="5.0" >5.0</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
405 <option value="7.5" >7.5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
406 <option value="10.0" >10.0</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
407 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
408 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
409 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
410 <param name = "cached_param20" type="data" label="Choose the step from which to get the parameter gapext"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
411 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
412 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
413 <conditional name="source21"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
414 <param name="source21_source" type="select" label="gapext Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
415 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
416 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
417 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
418 <when value="user"><param name="user_param21" type="select" label="Select gapext" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
419 <option value="10" >10</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
420 <option value="9" >9</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
421 <option value="8" >8</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
422 <option value="7" >7</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
423 <option value="6" >6</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
424 <option value="5" selected="true">5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
425 <option value="4" >4</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
426 <option value="3" >3</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
427 <option value="2" >2</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
428 <option value="1" >1</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
429 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
430 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
431 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
432 <param name = "cached_param21" type="data" label="Choose the step from which to get the parameter gapext"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
433 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
434 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
435 <conditional name="source22"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
436 <param name="source22_source" type="select" label="iteration Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
437 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
438 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
439 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
440 <when value="user"><param name="user_param22" type="select" label="Select iteration" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
441 <option value="none" >none</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
442 <option value="tree" >tree</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
443 <option value="alignment" >alignment</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
444 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
445 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
446 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
447 <param name = "cached_param22" type="data" label="Choose the step from which to get the parameter iteration"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
448 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
449 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
450 <conditional name="source23"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
451 <param name="source23_source" type="select" label="numiter Source"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
452 <option value="cached" selected="true">Param value will be taken from previous step</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
453 <option value="user">User will enter the param value</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
454 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
455 <when value="user"><param name="user_param23" type="select" label="Select numiter" help="see tip below"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
456 <option value="1" selected="true">1</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
457 <option value="2" >2</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
458 <option value="3" >3</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
459 <option value="4" >4</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
460 <option value="5" >5</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
461 <option value="6" >6</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
462 <option value="7" >7</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
463 <option value="8" >8</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
464 <option value="9" >9</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
465 <option value="10" >10</option> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
466 </param> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
467 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
468 <when value="cached"> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
469 <param name = "cached_param23" type="data" label="Choose the step from which to get the parameter numiter"/> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
470 </when></conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
471 </when> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
472 </conditional> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
473 </inputs> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
474 <outputs> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
475 <data format="tabular" name="output" /> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
476 </outputs> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
477 <help> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff
changeset
|
478 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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479 .. class:: infomark |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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480 |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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481 **TIP:** email type is xsd:string |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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482 </help> |
d5cd409b8a18
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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483 </tool> |