Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/workflowclients/client_7.xml~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="client_7" name="runclustalW2 ">
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2 <description> Client for method: runclustalW2 , Web service: http://om.cs.uga.edu/demo/clusatlW2.wadl </description>
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3 <command interpreter="python">
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4 #client_1.py
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5 $output
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6 http://www.ebi.ac.uk/Tools/services/restclustalw2/run
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7 email
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8 #if $source0.source0_source=="user" $source0.user_param0 #else $source0.cached_param0 #end if
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9 #if $cond_source.optional_param_source=="yes" type
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10 #if $cond_source.source1.source1_source=="user" $cond_source.source1.user_param1 #else $cond_source.source1.cached_param1 #end if
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11 title
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12 #if $cond_source.source2.source2_source=="user" $cond_source.source2.user_param2 #else $cond_source.source2.cached_param2 #end if
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13 output
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14 #if $cond_source.source3.source3_source=="user" $cond_source.source3.user_param3 #else $cond_source.source3.cached_param3 #end if
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15 alignments
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16 #if $cond_source.source4.source4_source=="user" $cond_source.source4.user_param4 #else $cond_source.source4.cached_param4 #end if
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17 outorder
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18 #if $cond_source.source5.source5_source=="user" $cond_source.source5.user_param5 #else $cond_source.source5.cached_param5 #end if
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19 sequence
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20 #if $cond_source.source6.source6_source=="user" $cond_source.source6.user_param6 #else $cond_source.source6.cached_param6 #end if
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21 ktup
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22 #if $cond_source.source7.source7_source=="user" $cond_source.source7.user_param7 #else $cond_source.source7.cached_param7 #end if
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23 window
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24 #if $cond_source.source8.source8_source=="user" $cond_source.source8.user_param8 #else $cond_source.source8.cached_param8 #end if
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25 score
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26 #if $cond_source.source9.source9_source=="user" $cond_source.source9.user_param9 #else $cond_source.source9.cached_param9 #end if
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27 topdiag
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28 #if $cond_source.source10.source10_source=="user" $cond_source.source10.user_param10 #else $cond_source.source10.cached_param10 #end if
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29 pairgap
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30 #if $cond_source.source11.source11_source=="user" $cond_source.source11.user_param11 #else $cond_source.source11.cached_param11 #end if
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31 pwmatrix
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32 #if $cond_source.source12.source12_source=="user" $cond_source.source12.user_param12 #else $cond_source.source12.cached_param12 #end if
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33 pwdnamatrix
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34 #if $cond_source.source13.source13_source=="user" $cond_source.source13.user_param13 #else $cond_source.source13.cached_param13 #end if
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35 pwgapopen
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36 #if $cond_source.source14.source14_source=="user" $cond_source.source14.user_param14 #else $cond_source.source14.cached_param14 #end if
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37 pwgapext
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38 #if $cond_source.source15.source15_source=="user" $cond_source.source15.user_param15 #else $cond_source.source15.cached_param15 #end if
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39 matrix
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40 #if $cond_source.source16.source16_source=="user" $cond_source.source16.user_param16 #else $cond_source.source16.cached_param16 #end if
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41 dnamatrix
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42 #if $cond_source.source17.source17_source=="user" $cond_source.source17.user_param17 #else $cond_source.source17.cached_param17 #end if
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43 gapopen
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44 #if $cond_source.source18.source18_source=="user" $cond_source.source18.user_param18 #else $cond_source.source18.cached_param18 #end if
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45 noendgaps
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46 #if $cond_source.source19.source19_source=="user" $cond_source.source19.user_param19 #else $cond_source.source19.cached_param19 #end if
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47 gapext
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48 #if $cond_source.source20.source20_source=="user" $cond_source.source20.user_param20 #else $cond_source.source20.cached_param20 #end if
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49 gapext
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50 #if $cond_source.source21.source21_source=="user" $cond_source.source21.user_param21 #else $cond_source.source21.cached_param21 #end if
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51 iteration
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52 #if $cond_source.source22.source22_source=="user" $cond_source.source22.user_param22 #else $cond_source.source22.cached_param22 #end if
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53 numiter
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54 #if $cond_source.source23.source23_source=="user" $cond_source.source23.user_param23 #else $cond_source.source23.cached_param23 #end if
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55 #else
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56 #end if
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57 </command>
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58 <inputs>
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59 <conditional name="source0">
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60 <param name="source0_source" type="select" label="id Source">
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61 <option value="cached" selected="true">Param value will be taken from previous step</option>
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62 <option value="user">User will enter the param value</option>
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63 </param>
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64 <when value="user">
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65 <param format="text" size = "150" name = "user_param0" type="text" label="Enter email" help="see tip below" />
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66 </when>
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67 <when value="cached">
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68 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter id"/>
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69 </when></conditional> <conditional name="cond_source">
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70 <param name="optional_param_source" type="select" label="Display Additional Parameters">
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71 <option value="no" selected="true">no</option>
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72 <option value="yes">yes</option>
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73 </param>
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74 <when value="no">
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75 </when>
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76 <when value="yes">
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77
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78 <conditional name="source1">
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79 <param name="source1_source" type="select" label="type Source">
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80 <option value="cached" selected="true">Param value will be taken from previous step</option>
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81 <option value="user">User will enter the param value</option>
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82 </param>
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83 <when value="user"><param name="user_param1" type="select" label="Select type" help="see tip below">
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84 <option value="protein" selected="true">protein</option>
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85 <option value="dna" >dna</option>
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86 </param>
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87 </when>
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88 <when value="cached">
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89 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter type"/>
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90 </when></conditional>
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91
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92 <conditional name="source2">
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93 <param name="source2_source" type="select" label="title Source">
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94 <option value="cached" selected="true">Param value will be taken from previous step</option>
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95 <option value="user">User will enter the param value</option>
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96 </param>
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97 <when value="user"><param format="text" size = "150" name = "user_param2" type="text" label="Enter title" help="see tip below" />
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98 </when>
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99 <when value="cached">
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100 <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter title"/>
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101 </when></conditional>
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102
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103 <conditional name="source3">
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104 <param name="source3_source" type="select" label="output Source">
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105 <option value="cached" selected="true">Param value will be taken from previous step</option>
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106 <option value="user">User will enter the param value</option>
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107 </param>
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108 <when value="user"><param name="user_param3" type="select" label="Select output" help="see tip below">
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109 <option value="aln1" selected="true">aln1</option>
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110 <option value="aln2" >aln2</option>
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111 <option value="gcg" >gcg</option>
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112 <option value="phylip" >phylip</option>
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113 <option value="nexus" >nexus</option>
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114 <option value="pir" >pir</option>
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115 <option value="gde" >gde</option>
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116 <option value="fasta" >fasta</option>
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117 </param>
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118 </when>
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119 <when value="cached">
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120 <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter output"/>
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121 </when></conditional>
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122
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123 <conditional name="source4">
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124 <param name="source4_source" type="select" label="alignments Source">
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125 <option value="cached" selected="true">Param value will be taken from previous step</option>
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126 <option value="user">User will enter the param value</option>
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127 </param>
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128 <when value="user"><param name="user_param4" type="select" label="Select alignments" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
129 <option value="slow" selected="true">slow</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
130 <option value="fast" >fast</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
131 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
132 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
133 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
134 <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter alignments"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
135 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
136
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
137 <conditional name="source5">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
138 <param name="source5_source" type="select" label="outorder Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
139 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
140 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
141 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
142 <when value="user"><param name="user_param5" type="select" label="Select outorder" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
143 <option value="aligned" selected="true">aligned</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
144 <option value="input" >input</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
145 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
146 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
147 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
148 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter outorder"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
149 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
150
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
151 <conditional name="source6">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
152 <param name="source6_source" type="select" label="sequence Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
153 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
154 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
155 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
156 <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter sequence" help="see tip below" />
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
157 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
158 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
159 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter sequence"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
160 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
161
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
162 <conditional name="source7">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
163 <param name="source7_source" type="select" label="ktup Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
164 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
165 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
166 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
167 <when value="user"><param name="user_param7" type="select" label="Select ktup" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
168 <option value="1" selected="true">1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
169 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
170 <option value="3" >3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
171 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
172 <option value="5" >5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
173 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
174 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
175 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
176 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter ktup"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
177 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
178
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
179 <conditional name="source8">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
180 <param name="source8_source" type="select" label="window Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
181 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
182 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
183 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
184 <when value="user"><param name="user_param8" type="select" label="Select window" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
185 <option value="10" >10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
186 <option value="9" >9</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
187 <option value="8" >8</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
188 <option value="7" >7</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
189 <option value="6" >6</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
190 <option value="5" selected="true">5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
191 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
192 <option value="3" >3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
193 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
194 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
195 <option value="0" >0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
196 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
197 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
198 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
199 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter window"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
200 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
201
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
202 <conditional name="source9">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
203 <param name="source9_source" type="select" label="score Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
204 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
205 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
206 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
207 <when value="user"><param name="user_param9" type="select" label="Select score" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
208 <option value="percent" selected="true">percent</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
209 <option value="absolute" >absolute</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
210 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
211 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
212 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
213 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter score"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
214 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
215
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
216 <conditional name="source10">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
217 <param name="source10_source" type="select" label="topdiag Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
218 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
219 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
220 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
221 <when value="user"><param name="user_param10" type="select" label="Select topdiag" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
222 <option value="10" >10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
223 <option value="9" >9</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
224 <option value="8" >8</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
225 <option value="7" >7</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
226 <option value="6" >6</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
227 <option value="5" selected="true">5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
228 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
229 <option value="3" >3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
230 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
231 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
232 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
233 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
234 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
235 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter topdiag"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
236 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
237
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
238 <conditional name="source11">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
239 <param name="source11_source" type="select" label="pairgap Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
240 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
241 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
242 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
243 <when value="user"><param name="user_param11" type="select" label="Select pairgap" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
244 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
245 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
246 <option value="3" selected="true">3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
247 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
248 <option value="5" >5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
249 <option value="10" >10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
250 <option value="25" >25</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
251 <option value="50" >50</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
252 <option value="100" >100</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
253 <option value="250" >250</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
254 <option value="500" >500</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
255 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
256 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
257 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
258 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter pairgap"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
259 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
260
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
261 <conditional name="source12">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
262 <param name="source12_source" type="select" label="pwmatrix Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
263 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
264 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
265 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
266 <when value="user"><param name="user_param12" type="select" label="Select pwmatrix" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
267 <option value="blosum" >blosum</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
268 <option value="pam" >pam</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
269 <option value="gonnet" selected="true">gonnet</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
270 <option value="id" >id</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
271 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
272 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
273 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
274 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter pwmatrix"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
275 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
276
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
277 <conditional name="source13">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
278 <param name="source13_source" type="select" label="pwdnamatrix Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
279 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
280 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
281 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
282 <when value="user"><param name="user_param13" type="select" label="Select pwdnamatrix" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
283 <option value="iub" selected="true">iub</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
284 <option value="clustalw" >clustalw</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
285 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
286 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
287 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
288 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter pwdnamatrix"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
289 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
290
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
291 <conditional name="source14">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
292 <param name="source14_source" type="select" label="pwgapopen Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
293 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
294 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
295 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
296 <when value="user"><param name="user_param14" type="select" label="Select pwgapopen" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
297 <option value="100" >100</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
298 <option value="50" >50</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
299 <option value="25" >25</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
300 <option value="10" selected="true">10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
301 <option value="5" >5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
302 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
303 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
304 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
305 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
306 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
307 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter pwgapopen"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
308 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
309
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
310 <conditional name="source15">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
311 <param name="source15_source" type="select" label="pwgapext Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
312 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
313 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
314 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
315 <when value="user"><param name="user_param15" type="select" label="Select pwgapext" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
316 <option value="0.05" >0.05</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
317 <option value="0.1" selected="true">0.1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
318 <option value="0.5" >0.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
319 <option value="1.0" >1.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
320 <option value="2.5" >2.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
321 <option value="5.0" >5.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
322 <option value="7.5" >7.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
323 <option value="10.0" >10.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
324 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
325 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
326 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
327 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter pwgapext"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
328 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
329
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
330 <conditional name="source16">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
331 <param name="source16_source" type="select" label="matrix Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
332 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
333 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
334 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
335 <when value="user"><param name="user_param16" type="select" label="Select matrix" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
336 <option value="blosum" >blosum</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
337 <option value="pam" >pam</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
338 <option value="gonnet" selected="true">gonnet</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
339 <option value="id" >id</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
340 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
341 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
342 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
343 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter matrix"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
344 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
345
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
346 <conditional name="source17">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
347 <param name="source17_source" type="select" label="dnamatrix Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
348 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
349 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
350 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
351 <when value="user"><param name="user_param17" type="select" label="Select dnamatrix" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
352 <option value="iub" selected="true">iub</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
353 <option value="clustalw" >clustalw</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
354 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
355 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
356 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
357 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter dnamatrix"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
358 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
359
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
360 <conditional name="source18">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
361 <param name="source18_source" type="select" label="gapopen Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
362 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
363 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
364 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
365 <when value="user"><param name="user_param18" type="select" label="Select gapopen" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
366 <option value="100" >100</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
367 <option value="50" >50</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
368 <option value="25" >25</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
369 <option value="10" selected="true">10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
370 <option value="5" >5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
371 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
372 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
373 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
374 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
375 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
376 <param name = "cached_param18" type="data" label="Choose the step from which to get the parameter gapopen"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
377 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
378
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
379 <conditional name="source19">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
380 <param name="source19_source" type="select" label="noendgaps Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
381 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
382 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
383 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
384 <when value="user"><param name="user_param19" type="select" label="Select noendgaps" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
385 <option value="false" selected="true">false</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
386 <option value="true" >true</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
387 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
388 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
389 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
390 <param name = "cached_param19" type="data" label="Choose the step from which to get the parameter noendgaps"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
391 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
392
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
393 <conditional name="source20">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
394 <param name="source20_source" type="select" label="gapext Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
395 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
396 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
397 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
398 <when value="user"><param name="user_param20" type="select" label="Select gapext" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
399 <option value="0.05" >0.05</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
400 <option value="0.20" selected="true">0.20</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
401 <option value="0.5" >0.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
402 <option value="1.0" >1.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
403 <option value="2.5" >2.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
404 <option value="5.0" >5.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
405 <option value="7.5" >7.5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
406 <option value="10.0" >10.0</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
407 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
408 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
409 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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410 <param name = "cached_param20" type="data" label="Choose the step from which to get the parameter gapext"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
411 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
412
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
413 <conditional name="source21">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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414 <param name="source21_source" type="select" label="gapext Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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415 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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diff changeset
416 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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diff changeset
417 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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diff changeset
418 <when value="user"><param name="user_param21" type="select" label="Select gapext" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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419 <option value="10" >10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
420 <option value="9" >9</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
421 <option value="8" >8</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
422 <option value="7" >7</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
423 <option value="6" >6</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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424 <option value="5" selected="true">5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
425 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
426 <option value="3" >3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
427 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
428 <option value="1" >1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
429 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
430 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
431 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
432 <param name = "cached_param21" type="data" label="Choose the step from which to get the parameter gapext"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
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433 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
434
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
435 <conditional name="source22">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
436 <param name="source22_source" type="select" label="iteration Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
437 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
438 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
439 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
440 <when value="user"><param name="user_param22" type="select" label="Select iteration" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
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441 <option value="none" >none</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
442 <option value="tree" >tree</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
443 <option value="alignment" >alignment</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
444 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
445 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
446 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
447 <param name = "cached_param22" type="data" label="Choose the step from which to get the parameter iteration"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
448 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
449
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
450 <conditional name="source23">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
451 <param name="source23_source" type="select" label="numiter Source">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
452 <option value="cached" selected="true">Param value will be taken from previous step</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
453 <option value="user">User will enter the param value</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
454 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
455 <when value="user"><param name="user_param23" type="select" label="Select numiter" help="see tip below">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
456 <option value="1" selected="true">1</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
457 <option value="2" >2</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
458 <option value="3" >3</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
459 <option value="4" >4</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
460 <option value="5" >5</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
461 <option value="6" >6</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
462 <option value="7" >7</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
463 <option value="8" >8</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
464 <option value="9" >9</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
465 <option value="10" >10</option>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
466 </param>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
467 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
468 <when value="cached">
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
469 <param name = "cached_param23" type="data" label="Choose the step from which to get the parameter numiter"/>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
470 </when></conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
471 </when>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
472 </conditional>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
473 </inputs>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
474 <outputs>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
475 <data format="tabular" name="output" />
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
476 </outputs>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
477 <help>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
478
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
479 .. class:: infomark
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
480
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
481 **TIP:** email type is xsd:string
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
482 </help>
d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
ganjoo
parents:
diff changeset
483 </tool>