Mercurial > repos > ganjoo > webservice_toolsuite

comparison WebServiceToolWorkflow/WebServiceTool_input_method.py @ 0:d5cd409b8a18 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:d5cd409b8a18
1 import warnings
2 import platform
3 import os,sys
4 from generateClient import *
5 from generateClient1 import *
6
7 '''input : wadl/wsdl/sawadl-url, method name
8 purpose:
9 1. Calls methods from generateClient1.py to generate client description for one-time invocation
10 of the Web service. This client description is added as a xml file under ./clients/
11 2. Calls methods from generateClient.py to generate client description for invocation of Web service
12 in a workflow. This client description is added as a xml file under ./workflowclients/
13 3. Adds the path to the above xml files to Galaxy tool-conf.xml file using call edit_tool_conf.py
14 '''
15
16 #read the url passed as an argument
17 url = sys.argv[2]
18
19 #split url passed on '.' character
20 urllist = url.split('.')
21
22 clientGenerator = ClientGenerator(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
23 clientGenerator1 = ClientGenerator1(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
24
25 #if url passed is of a WADL document
26 if urllist[len(urllist)-1]=='wadl' or urllist[len(urllist)-1]=='WADL':
27 javahome = os.environ.get('JAVA_HOME')
28 galaxyhome=os.environ.get('GALAXY_HOME')
29 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/bin'
30 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/lib/'
31 machine = platform.machine()
32
33 #start JVM depending on the machine. The location of libjvm.so is assumed to be standard.
34 #you can replace lines 32 to 41, with startJVM("LOCATION OF YOUR LIBJVM.SO","-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
35 if machine == 'x86_64' :
36 print 'a'
37 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
38 elif machine == 'i686' :
39 print 'b'
40 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
41 elif machine == 'sun4u' :
42 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
43 else :
44 System.exit("Could not identify machine, please specify path to libjvm.so")
45
46 #generate client xml for one time invocation of a Web service
47 clientGenerator1.wadlClient()
48
49 #generate client xml for invocation of a Web service in workflows
50 clientGenerator.wadlClient()
51
52 #if url passed is of a WSDL 2.0 document
53 elif urllist[len(urllist)-1]=='wsdl' or urllist[len(urllist)-1]=='WSDL':
54 clientGenerator.wsdlClient()
55 clientGenerator1.wsdlClient()
56
57 #if url passed is of a SAWADL document
58 elif urllist[len(urllist)-1]=='sawadl' or urllist[len(urllist)-1]=='SAWADL':
59
60 javahome = os.environ.get('JAVA_HOME')
61 galaxyhome=os.environ.get('GALAXY_HOME')
62 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/lib/SAWADLParser/bin'
63 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/lib/'
64 machine = platform.machine()
65
66 if machine == 'x86_64' :
67 print 'a'
68 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
69 elif machine == 'i686' :
70 print 'b'
71 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
72 elif machine == 'sun4u' :
73 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
74 else :
75 print 'c'
76 System.exit("Could not identify machine, please specify path to libjvm.so")
77
78 #f=open(sys.argv[5],'w')
79 #f.write('reached here 2 \t')
80 #f.close()
81
82 clientGenerator.sawadlClient()
83 clientGenerator1.sawadlClient()
84 #f=open(sys.argv[5],'w')
85 #f.write('reached here 3')
86 #f.close()
87
88 shutdownJVM()
89
90
91
92
93
94