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comparison WebServiceToolWorkflow/workflowclients/client_5.xml~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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-1:000000000000 0:d5cd409b8a18
1 <tool id="client_5" name="getDDBJEntry ">
2 <description> Client for method: getDDBJEntry , Web service: http://cs.uga.edu/~ganjoo/galaxy/DDBJGetEntry.wadl </description>
3 <command interpreter="python">
4 client_1.py
5 #if $cond_source.optional_param_source=="no":
6 $output
7 http://www.xml.nig.ac.jp/rest/Invoke
8 service
9 #if $source0.source0_source=="user":
10 $source0.user_param0
11 #else:
12 $source0.cached_param0
13 #end if
14 method
15 #if $source1.source1_source=="user":
16 $source1.user_param1
17 #else:
18 $source1.cached_param1
19 #end if
20 accession
21 #if $source2.source2_source=="user":
22 $source2.user_param2
23 #else:
24 $source2.cached_param2
25 #end if
26 #else:
27 $output
28 http://www.xml.nig.ac.jp/rest/Invoke
29 service
30 #if $source0.source0_source=="user":
31 $source0.user_param0
32 #else:
33 $source0.cached_param0
34 #end if
35 method
36 #if $source1.source1_source=="user":
37 $source1.user_param1
38 #else:
39 $source1.cached_param1
40 #end if
41 accession
42 #if $source2.source2_source=="user":
43 $source2.user_param2
44 #else:
45 fileInput
46 $source2.cached_param2
47 #end if
48 #end if
49 </command>
50 <inputs>
51 <conditional name="source0">
52 <param name="source0_source" type="select" label="Service to be invoked Source">
53 <option value="cached" selected="true">Param value will be taken from previous step</option>
54 <option value="user">User will enter the param value</option>
55 </param>
56 <when value="user">
57 <param name="user_param0" type="select" label="Select Service to be invoked " help="see tip below">
58 <option value="GetEntry" >GetEntry</option>
59 </param>
60 </when>
61 <when value="cached">
62 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter Service to be invoked "/>
63 </when></conditional><conditional name="source1">
64 <param name="source1_source" type="select" label="Method to be used Source">
65 <option value="cached" selected="true">Param value will be taken from previous step</option>
66 <option value="user">User will enter the param value</option>
67 </param>
68 <when value="user">
69 <param name="user_param1" type="select" label="Select Method to be used" help="see tip below">
70 <option value="getDDBJEntry" selected="true">getDDBJEntry</option>
71 </param>
72 </when>
73 <when value="cached">
74 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter Method to be used"/>
75 </when></conditional><conditional name="source2">
76 <param name="source2_source" type="select" label="DDBJ accession number Source">
77 <option value="cached" selected="true">Param value will be taken from previous step</option>
78 <option value="user">User will enter the param value</option>
79 </param>
80 <when value="user">
81 <param format="text" size = "150" name = "user_param2" type="text" label="Enter DDBJ accession number" help="see tip below" />
82 </when>
83 <when value="cached">
84 <param name = "cached_param2" type="data" format="tabular" label="Choose the step from which to get the parameter DDBJ accession number"/>
85 </when></conditional>
86
87 <conditional name="cond_source">
88 <param name="optional_param_source" type="select" label="Display Additional Parameters">
89 <option value="no" selected="true">no</option>
90 <option value="yes">yes</option>
91 </param>
92 <when value="no">
93 </when>
94 <when value="yes">
95 </when>
96 </conditional>
97 </inputs>
98 <outputs>
99 <data format="tabular" name="output" />
100 </outputs>
101 <help>
102
103 .. class:: infomark
104
105 **TIP:** Service to be invoked type is xsd:string
106
107 .. class:: infomark
108
109 **TIP:** Method to be used type is xsd:string
110
111 .. class:: infomark
112
113 **TIP:** DDBJ accession number type is xsd:string
114 </help>
115 </tool>