Mercurial > repos > ganjoo > webservice_toolsuite
diff WebServiceToolWorkflow/edit_tool_conf1.py~ @ 0:d5cd409b8a18 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | ganjoo |
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date | Tue, 07 Jun 2011 18:00:50 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/WebServiceToolWorkflow/edit_tool_conf1.py~ Tue Jun 07 18:00:50 2011 -0400 @@ -0,0 +1,62 @@ +import os + +class editToolConfig1(object): + def addTool(self,toolName): + galaxyhome=os.environ.get('GALAXY_HOME') + f1=open(galaxyhome+'/tool_conf.xml','r') + f1.seek(0,0) + f2=open(galaxyhome+'/tool_conf_backup.xml','w') + f2.seek(0,0) + + #copy everything from tool_conf.xml upto the section 'Web Service Tools' into another file f2 + line = f1.readline() + f2.write(line) + + lineStripped=line.lstrip() + lineStripped=lineStripped.rstrip() + + #add the one-time Web service invocation tool under Web Service Tools section + while not lineStripped == '<section name="Web Service Tools" id="WebServices">': + line = f1.readline() + f2.write(line) + lineStripped = line.lstrip() + lineStripped=lineStripped.rstrip() + else: + print line + + f2.write(' <tool file="WebServiceToolWorkflow/clients/'+toolName + '.xml"/>\n') + + #copy rest of tool_conf.xml file f2 + while not lineStripped == '</toolbox>': + line = f1.readline() + f2.write(line) + lineStripped = line.lstrip() + lineStripped=lineStripped.rstrip() + else: + print line + + ##close f1 and f2 + f1.close() + f2.close() + + ##interchange modes of f1 and f2 + f1=open(galaxyhome+'/tool_conf.xml','w') + f1.seek(0,0) + f2=open(galaxyhome+'/tool_conf_backup.xml','r') + f2.seek(0,0) + + line = f2.readline() + f1.write(line) + + lineStripped=line.lstrip() + + ##write entire f2 into f1 (reverse roles) + while not lineStripped == '</toolbox>\n': + line = f2.readline() + f1.write(line) + lineStripped = line.lstrip() + else: + print line + + f1.close() + f2.close()