Mercurial > repos > ganjoo > webservice_toolsuite
view WebServiceToolWorkflow/WebServiceTool_input_method.py @ 0:d5cd409b8a18 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | ganjoo |
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date | Tue, 07 Jun 2011 18:00:50 -0400 |
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import warnings import platform import os,sys from generateClient import * from generateClient1 import * '''input : wadl/wsdl/sawadl-url, method name purpose: 1. Calls methods from generateClient1.py to generate client description for one-time invocation of the Web service. This client description is added as a xml file under ./clients/ 2. Calls methods from generateClient.py to generate client description for invocation of Web service in a workflow. This client description is added as a xml file under ./workflowclients/ 3. Adds the path to the above xml files to Galaxy tool-conf.xml file using call edit_tool_conf.py ''' #read the url passed as an argument url = sys.argv[2] #split url passed on '.' character urllist = url.split('.') clientGenerator = ClientGenerator(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5]) clientGenerator1 = ClientGenerator1(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5]) #if url passed is of a WADL document if urllist[len(urllist)-1]=='wadl' or urllist[len(urllist)-1]=='WADL': javahome = os.environ.get('JAVA_HOME') galaxyhome=os.environ.get('GALAXY_HOME') classpath= galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/bin' jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/lib/' machine = platform.machine() #start JVM depending on the machine. The location of libjvm.so is assumed to be standard. #you can replace lines 32 to 41, with startJVM("LOCATION OF YOUR LIBJVM.SO","-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) if machine == 'x86_64' : print 'a' startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) elif machine == 'i686' : print 'b' startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) elif machine == 'sun4u' : startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) else : System.exit("Could not identify machine, please specify path to libjvm.so") #generate client xml for one time invocation of a Web service clientGenerator1.wadlClient() #generate client xml for invocation of a Web service in workflows clientGenerator.wadlClient() #if url passed is of a WSDL 2.0 document elif urllist[len(urllist)-1]=='wsdl' or urllist[len(urllist)-1]=='WSDL': clientGenerator.wsdlClient() clientGenerator1.wsdlClient() #if url passed is of a SAWADL document elif urllist[len(urllist)-1]=='sawadl' or urllist[len(urllist)-1]=='SAWADL': javahome = os.environ.get('JAVA_HOME') galaxyhome=os.environ.get('GALAXY_HOME') classpath= galaxyhome + '/tools/WebServiceToolWorkflow/lib/SAWADLParser/bin' jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/lib/' machine = platform.machine() if machine == 'x86_64' : print 'a' startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) elif machine == 'i686' : print 'b' startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) elif machine == 'sun4u' : startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath) else : print 'c' System.exit("Could not identify machine, please specify path to libjvm.so") #f=open(sys.argv[5],'w') #f.write('reached here 2 \t') #f.close() clientGenerator.sawadlClient() clientGenerator1.sawadlClient() #f=open(sys.argv[5],'w') #f.write('reached here 3') #f.close() shutdownJVM()