Mercurial > repos > ganjoo > webservice_toolsuite
view WebServiceToolWorkflow/edit_tool_conf.py~ @ 0:d5cd409b8a18 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | ganjoo |
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date | Tue, 07 Jun 2011 18:00:50 -0400 |
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import os class editToolConfig(object): def addTool(self,toolName): galaxyhome=os.environ.get('GALAXY_HOME') f1=open(galaxyhome+'/tool_conf.xml','r') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','w') f2.seek(0,0) ##first copy everything upto WebServiceTool1.xml into another file f2 line = f1.readline() f2.write(line) lineStripped=line.lstrip() lineStripped=lineStripped.rstrip() #add the workflow Web service invocation tool under Web Service Workflow Tools section while not lineStripped == '<section name="Web Service Workflow Tools" id="WebServiceWorkflow">': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ## add new tool to f2 f2.write(' <tool file="WebServiceToolWorkflow/workflowclients/'+toolName + '.xml"/>\n') ## copy rest of f1 into f2 while not lineStripped == '</toolbox>': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ##close f1 and f2 f1.close() f2.close() ##interchange modes of f1 and f2 f1=open(galaxyhome+'/tool_conf.xml','w') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','r') f2.seek(0,0) line = f2.readline() f1.write(line) lineStripped=line.lstrip() ##write entire f2 into f1 (reverse roles) while not lineStripped == '</toolbox>\n': line = f2.readline() f1.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line f1.close() f2.close()