Mercurial > repos > gbcs-embl-heidelberg > je_clip

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planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit bc2365188e0dd0f20925884276a27914bb714280
author gbcs-embl-heidelberg
date Mon, 23 Apr 2018 05:46:19 -0400
parents 9d85f5915da9
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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1 # HowTo update the toolshed repository
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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3 After linting/testing your update using ``planemo test`` and ``planemo serve`` you can upload the changes to the toolshed repos.
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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5 For this you need to have the credentials or api_key of our ``gbcs-embl-heidelberg`` user.
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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6 To make it easier, put this information in your global ``~/.planemo.yml`` file. The format is described here: https://planemo.readthedocs.io/en/latest/configuration.html
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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8 The commands below work due to the ``.shed.yml`` file in this directory.
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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10 ## Update testtoolshed
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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12 ``planemo shed_update --shed_target testtoolshed``
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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14 Look at the result and then update the main toolshed.
2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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16 ## Update toolshed
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18 ``planemo shed_update --shed_target toolshed``
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