Mercurial > repos > gbcs-embl-heidelberg > je_clip

comparison je-clip.xml @ 2:b61628ae2371 draft

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planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 62411561ae3bc65ea8762d27ec79a7d912503e5b
author gbcs-embl-heidelberg
date Wed, 07 Dec 2016 11:57:50 -0500
parents 101525093ba1
children 2cfed59e4d27
comparison
equal deleted inserted replaced
1:dfacabbde112 2:b61628ae2371
19 19
20 @common_options_cmd@ 20 @common_options_cmd@
21 @barcode_len_cmd@ 21 @barcode_len_cmd@
22 ADD=${ADD} 22 ADD=${ADD}
23 #if str($ADD) == "false": 23 #if str($ADD) == "false":
24 BARCODE_RESULT_FILENAME=$BARCODE_RESULT_FILENAME 24 BARCODE_RESULT_FILENAME=${BARCODE_RESULT_FILENAME}
25 #end if 25 #end if
26 26
27 OF1=${OF1} 27 OF1=${OF1}
28 #if str( $library.type ) != "single": 28 #if str( $library.type ) != "single":
29 OF2=${OF2} 29 OF2=${OF2}
52 <expand macro="common_options"/> 52 <expand macro="common_options"/>
53 53
54 54
55 </inputs> 55 </inputs>
56 <outputs> 56 <outputs>
57 <data name="BARCODE_RESULT_FILENAME" format="tabular" label="Je-Clipped Barcodes"/> 57 <data name="BARCODE_RESULT_FILENAME" format="tabular" label="Je-Clipped Barcodes">
58 <data name="OF1" format_source="input_1" label="Je-Clipped {on_string}"/> 58 <filter>!ADD</filter>
59 <data name="OF2" format_source="input_1" label="Je-Clipped {on_string}"> 59 </data>
60 <filter>(type != "single")</filter> 60 <data name="OF1" format_source="input_1" label="Je-Clip OF1: ${on_string}"/>
61 <data name="OF2" format_source="input_2" label="Je-Clip OF2: ${on_string}">
62 <filter>library["type"] != "single"</filter>
61 </data> 63 </data>
62 </outputs> 64 </outputs>
63 65
64 <tests> 66 <tests>
65 <test> 67 <test>