annotate README.md @ 10:bd3cdf128bcb draft default tip

planemo upload for repository https://github.com/gbcs-embl/Je/tree/master/src/galaxy commit 5acb6bc253e38c5c61fc70c10443716d4109a711
author gbcs-embl-heidelberg
date Sat, 04 Aug 2018 09:02:27 -0400
parents 8930b411a9d7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
1 # HowTo update the toolshed repository
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
2
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
3 After linting/testing your update using ``planemo test`` and ``planemo serve`` you can upload the changes to the toolshed repos.
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
4
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
5 For this you need to have the credentials or api_key of our ``gbcs-embl-heidelberg`` user.
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
6 To make it easier, put this information in your global ``~/.planemo.yml`` file. The format is described here: https://planemo.readthedocs.io/en/latest/configuration.html
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
7
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
8 The commands below work due to the ``.shed.yml`` file in this directory.
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
9
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
10 ## Update testtoolshed
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
11
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
12 ``planemo shed_update --shed_target testtoolshed``
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
13
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
14 Look at the result and then update the main toolshed.
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
15
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
16 ## Update toolshed
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
17
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
18 ``planemo shed_update --shed_target toolshed``
8930b411a9d7 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
gbcs-embl-heidelberg
parents:
diff changeset
19