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comparison je-demultiplex.xml @ 5:222819c87d90 draft

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planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 0eefd837333dae6fbecaf4f55b053268d844eff6
author gbcs-embl-heidelberg
date Wed, 02 Aug 2017 10:59:28 -0400
parents 8930b411a9d7
children 8f16495dc5f2
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4:6da7b7886cbf 5:222819c87d90
1 <tool id="je_demultiplex" name="Je-Demultiplex" version="@VERSION_STRING@"> 1 <tool id="je_demultiplex" name="Je-Demultiplex" version="@VERSION_STRING@">
2 <description>demultiplexes fastq files</description> 2 <description>demultiplexes fastq files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" />
6 <stdio> 7 <stdio>
7 <exit_code range="1:" level="fatal" description="Tool exception" /> 8 <exit_code range="1:" level="fatal" description="Tool exception" />
8 </stdio> 9 </stdio>
9 <version_command>echo '1.0'</version_command> 10 <expand macro="version_command" />
10 <command interpreter="bash"> 11 <command>
11 <![CDATA[ 12 <![CDATA[
12 je demultiplex 13 je demultiplex
13 14
14 ## Fastq inputs 15 ## Fastq inputs
15 @single_or_paired_cmd@ 16 @single_or_paired_cmd@
89 <discovered_dataset designation="sample1_CACTGTGTATAG_1" file="sample1_CACTGTGTATAG_1.txt"/> 90 <discovered_dataset designation="sample1_CACTGTGTATAG_1" file="sample1_CACTGTGTATAG_1.txt"/>
90 </output> 91 </output>
91 </test> 92 </test>
92 </tests> 93 </tests>
93 94
94 95 <help>
95 <help>
96 <![CDATA[ 96 <![CDATA[
97 **What it does** 97 **What it does**
98 98
99 Je demultiplex: A fastq file demultiplexer with optional handling of Unique Molecular Identifiers for further use 99 Je demultiplex: A fastq file demultiplexer with optional handling of Unique Molecular Identifiers for further use
100 in 'markdupes' module. 100 in 'markdupes' module.
432 barcoded. 432 barcoded.
433 N.B: this file will have a size of about one of the fastq input files. 433 N.B: this file will have a size of about one of the fastq input files.
434 434
435 Default value: null. 435 Default value: null.
436 ]]> 436 ]]>
437 </help> 437 </help>
438 438 <expand macro="citations"/>
439 </tool> 439 </tool>