Mercurial > repos > gbcs-embl-heidelberg > je_demultiplex
diff macros.xml @ 5:222819c87d90 draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 0eefd837333dae6fbecaf4f55b053268d844eff6
author | gbcs-embl-heidelberg |
---|---|
date | Wed, 02 Aug 2017 10:59:28 -0400 |
parents | 6da7b7886cbf |
children | dacd089d81ae |
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--- a/macros.xml Tue Aug 01 03:42:43 2017 -0400 +++ b/macros.xml Wed Aug 02 10:59:28 2017 -0400 @@ -1,6 +1,14 @@ <macros> <token name="@VERSION_STRING@">1.2</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="1.2">je-suite</requirement> + </requirements> + </xml> + <xml name="version_command"> + <version_command>je version 2>&1 | tail -n 1</version_command> + </xml> <token name="@single_or_paired_cmd@"> #if str( $library.type ) == "single": @@ -278,7 +286,7 @@ </token> <xml name="demultiplexer_common_output_options"> <param name="KEEP_UNASSIGNED_READ" type="boolean" label="Keep unassigned reads (KEEP_UNASSIGNED_READ)" - truealue="true" + truevalue="true" falsevalue="false" checked="true" /> @@ -317,11 +325,9 @@ help="Set to empty or null for no replacement." value=":"/> - <param name="GZ" type="boolean" hidden="true" label="Compress output (GZ)" + <param name="GZ" type="hidden" label="Compress output (GZ)" help="will result in fastq.gz files." - truevalue="true" - falsevalue="false" - checked="false"/> + value="false"/> </xml> <token name="@demultiplexer_common_outputs_cmd@"> @@ -336,5 +342,9 @@ <filter>(adv_options['DIAG'] == 'true')</filter> </data> </xml> - + <xml name="citations"> + <citations> + <citation type="doi">10.1186/s12859-016-1284-2</citation> + </citations> + </xml> </macros>