Mercurial > repos > gbcs-embl-heidelberg > je_demultiplex
changeset 6:dacd089d81ae draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 25e8fd2946fda4b9d280f2178841b2231bc3a3d0
| author | gbcs-embl-heidelberg |
|---|---|
| date | Fri, 15 Sep 2017 08:17:48 -0400 |
| parents | 222819c87d90 |
| children | 8f16495dc5f2 |
| files | macros.xml test-data/illu_summary_PE.txt |
| diffstat | 2 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/macros.xml Wed Aug 02 10:59:28 2017 -0400 +++ b/macros.xml Fri Sep 15 08:17:48 2017 -0400 @@ -27,8 +27,8 @@ <xml name="paired_options"> <when value="paired"> - <param name="input_1" format="fastq,gz" type="data" label="FASTQ file #1"/> - <param name="input_2" format="fastq,gz" type="data" label="FASTQ file #2"/> + <param name="input_1" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" type="data" label="FASTQ file #1"/> + <param name="input_2" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" type="data" label="FASTQ file #2"/> <yield /> <param name="SAME_HEADERS" type="boolean" label="Ensure headers of both reads of a pair are identical (SAME_HEADERS)" @@ -37,7 +37,7 @@ falsevalue="false" checked="false"/> </when> <when value="paired_collection"> - <param name="input_1" format="fastq,gz" type="data_collection" collection_type="paired" + <param name="input_1" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" type="data_collection" collection_type="paired" label="FASTQ Paired Dataset"/> <yield /> <param name="SAME_HEADERS" type="boolean" @@ -70,18 +70,18 @@ <option value="paired_collection">Paired-end Dataset Collection</option> </param> <when value="single"> - <param name="input_1" format="fastq,gz" type="data" label="FASTQ file"/> - <param name="I1" type="data" format="fastq,gz" label="First Index File"/> + <param name="input_1" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" type="data" label="FASTQ file"/> + <param name="I1" type="data" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" label="First Index File"/> </when> <expand macro="paired_options"> - <param name="I1" type="data" format="fastq,gz" label="First Index File"/> + <param name="I1" type="data" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" label="First Index File"/> <conditional name="I2_CONDITIONAL"> <param name="I2_AVAILABLE" type="select" label="Do you have a second index file?"> <option value="true">Yes</option> <option value="false" selected="true">No</option> </param> <when value="true"> - <param name="I2" type="data" format="fastq,gz" label="Second Index File"/> + <param name="I2" type="data" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" label="Second Index File"/> <expand macro="bred_conditional"/> </when> <when value="false"/> @@ -98,7 +98,7 @@ <option value="paired_collection">Paired-end Dataset Collection</option> </param> <when value="single"> - <param name="input_1" format="fastq,gz" type="data" label="FASTQ file"/> + <param name="input_1" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz" type="data" label="FASTQ file"/> </when> <expand macro="paired_options"> <yield />
--- a/test-data/illu_summary_PE.txt Wed Aug 02 10:59:28 2017 -0400 +++ b/test-data/illu_summary_PE.txt Fri Sep 15 08:17:48 2017 -0400 @@ -4,8 +4,8 @@ Assigned Reads (pairs) 10 Unassigned Reads (pairs) 15 # Individual sample read (pair) counts : -emb681m1 2 emb681m4 2 emb681m5 2 +emb681m1 2 +emb6801m1 2 emb6801m2 2 -emb6801m1 2