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comparison tool_dependencies.xml @ 8:295b3112ca8f draft

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Change to tool_dependencies. BedTools would not install.
author geert-vandeweyer
date Thu, 13 Feb 2014 05:07:15 -0500
parents 26a5b8623597
children 4d4054a97b40
comparison
equal deleted inserted replaced
7:6808c39f34cd 8:295b3112ca8f
4 <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bedtools" version="2.18.2"> 6 <package name="bedtools" version="2.18.2">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url" target_filename="bedtools-2.18.2.tar.gz" >https://github.com/arq5x/bedtools2/releases/download/v2.18.2/bedtools-2.18.2.tar.gz</action> 9 <action type="download_by_url" target_filename="bedtools2-2.18.2.tar.gz" >https://github.com/arq5x/bedtools2/archive/v2.18.2.tar.gz</action>
10 <action type="shell_command">make</action> 10 <action type="shell_command">make</action>
11 <action type="move_file"> 11 <action type="move_file">
12 <source>bin/</source> 12 <source>bin/</source>
13 <destination>$INSTALL_DIR/bin</destination> 13 <destination>$INSTALL_DIR/bin</destination>
14 </action> 14 </action>