Mercurial > repos > geert-vandeweyer > coverage_report

comparison CoverageReport.xml @ 15:a24c8e81cee0 draft

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Uploaded
author geert-vandeweyer
date Wed, 18 Jun 2014 08:14:43 -0400
parents 86df3f847a72
children 43427b07e6bb
comparison
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14:cdec7fab3373 15:a24c8e81cee0
26 #else: 26 #else:
27 -n "Unspecified" 27 -n "Unspecified"
28 #end if 28 #end if
29 </command> 29 </command>
30 <requirements> 30 <requirements>
31 <requirement type="package" version="3.0.2">R</requirement> 31 <requirement type="package" version="3.0.2">r</requirement>
32 <requirement type="package" version="2.18.2">bedtools</requirement> 32 <requirement type="package" version="2.18.2">bedtools</requirement>
33 <requirement type="package" version="0.1.18">samtools</requirement> 33 <requirement type="package" version="0.1.18">samtools</requirement>
34 <requirement type="binary">pdflatex</requirement>
35 </requirements> 34 </requirements>
36 <inputs> 35 <inputs>
37 <param name="input1" type="data" format="bam" label="BAM file" help="BAM file of mapped reads" /> 36 <param name="input1" type="data" format="bam" label="BAM file" help="BAM file of mapped reads" />
38 <param name="input2" type="data" format="bed" label="Target Regions BED" help="BED file containing regions of interest. See below for format" /> 37 <param name="input2" type="data" format="bed" label="Target Regions BED" help="BED file containing regions of interest. See below for format" />
39 <param name="threshold" type="integer" value="40" label="Minimal Coverage Threshold" help="Default: 40" /> 38 <param name="threshold" type="integer" value="40" label="Minimal Coverage Threshold" help="Default: 40" />