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view tool_dependencies.xml @ 26:859999cb135b draft

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revised routines. Better handling of collapsing, isoforms and mutiple mapppings. Barplots revised to visualise average base coverage in exon instead of total number of reads in exon
author geert-vandeweyer
date Wed, 29 Nov 2017 08:12:27 -0500
parents 06ccf2048b8f
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.0.3">
        <repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bedtools" version="2.18.2">
	<repository changeset_revision="35905f2ae9f4" name="package_bedtools_2_18_2" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
   <package name="samtools" version="0.1.18">
	<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
   </package>
</tool_dependency>