sendmail: sendmail.pl annotate

annotate sendmail.pl @ 1:0b1cdae7ad5b draft

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author	geert-vandeweyer
date	Wed, 08 May 2013 04:45:00 -0400
parents	ee7ea1c2d01a
children

rev	line source
0 ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	1 #!/usr/bin/perl
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	2
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	3 # load modules
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	4 use Getopt::Std;
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	5
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	6 ##########################
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	7 # COMMAND LINE ARGUMENTS #
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	8 ##########################
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	9 # u = (u)ser email from galaxy
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	10 # s = subject
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	11 # a = sample (a)nnotation
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	12 # g = sample (g)ender
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	13 # o = (o)utput file (simple text file)
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	14 getopts('u:s:o:d:', \%opts); # option are in %opts
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	15
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	16
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	17 if (!exists($opts{'u'})) {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	18 die('no email specified');
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	19 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	20 $email = $opts{'u'};
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	21
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	22 if (exists($opts{'s'}) && $opts{'s'} ne '') {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	23 $subject = $opts{'s'};
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	24 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	25 else {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	26 $subject = "Galaxy Workflow or Job Finished\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	27 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	28
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	29 # first compose message.
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	30 open OUT, ">mail.txt";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	31 print OUT "to: $email\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	32 print OUT "subject: $subject\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	33 ## EDIT THE FROM EMAIL !!!
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	34 print OUT "from: ADMIN\@Your.Galaxy.org\n\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	35 print OUT "Your Workflow on the Biomina Galaxy instance is finished. \n\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	36 #print OUT "Access the results at : http://143.169.238.104/galaxy/\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	37 if (exists($opts{'d'})) {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	38 my @files = split(/@@@/,$opts{'d'});
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	39 print OUT "\n\nThe following datasets needed to be available before sending this notice:\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	40 foreach (@files) {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	41 $_ =~ s/^\s+//;
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	42 if ($_ eq '') {
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	43 next;
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	44 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	45 print OUT " - $_\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	46 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	47 }
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	48 print OUT "\n\nPlease clean up unneeded datafiles, including hidden files (select 'show hidden').\n";
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	49 close OUT;
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	50 system("sendmail $email < mail.txt");
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	51 system("rm -f mail.txt");
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	52
ee7ea1c2d01a You must edit the sender email in the perl script after installation! geert-vandeweyer parents: diff changeset	53

Mercurial > repos > geert-vandeweyer > sendmail

annotate sendmail.pl @ 1:0b1cdae7ad5b draft