Mercurial > repos > geert-vandeweyer > varscan_wrapper

diff varscan/tool_dependencies.xml @ 4:572397bbe057 draft default tip

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Added Xmx10G setting to both varscan_somatic wrappers
author geert-vandeweyer
date Wed, 26 Mar 2014 05:24:22 -0400
parents 848f3dc54593
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/varscan/tool_dependencies.xml	Wed Mar 26 05:24:22 2014 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="VarScan" version="2.3.5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.5.jar</action>
+                <action type="move_file">
+                    <source>VarScan.v2.3.5.jar</source>
+                    <destination>$INSTALL_DIR/jars</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>