Mercurial > repos > geert-vandeweyer > vcf_to_variantdb
comparison readme.rst @ 6:775372e00f55 draft
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| author | geert-vandeweyer |
|---|---|
| date | Fri, 21 Feb 2014 07:17:28 -0500 |
| parents | d03a63a57e82 |
| children |
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| 5:6ddc1c6472ef | 6:775372e00f55 |
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| 1 Galaxy wrapper for VariantDB Import | |
| 2 =================================== | |
| 3 | |
| 4 This wrapper and VariantDB is written by Geert Vandeweyer. | |
| 5 | |
| 6 The recommended installation is by means of the toolshed_. | |
| 7 | |
| 8 .. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/vcf_to_variantdb | |
| 9 | |
| 10 Galaxy should be able to install the needed perl module dependencies automatically | |
| 11 for you. To allow your server to communicate with VariantDB, you must edit the GALAXY_URL environment variable in the file: | |
| 12 | |
| 13 <tool_dependency_dir>/environment_settings/GALAXY_URL/geert-vandeweyer/vcf_to_variantdb/<hash_string>/env.sh | |
| 14 | |
| 15 to point to the full URL of the server (e.g: http://biominavm-galaxy.biomina.be/galaxy ) where you have installed the wrapper. | |
| 16 | |
| 17 Finally, if you also have a private VariantDB instance, you need to add it to the wrapper configuration file, as an extra option. |