Mercurial > repos > geert-vandeweyer > vcf_to_variantdb
diff readme.rst @ 6:775372e00f55 draft
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author | geert-vandeweyer |
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date | Fri, 21 Feb 2014 07:17:28 -0500 |
parents | d03a63a57e82 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Fri Feb 21 07:17:28 2014 -0500 @@ -0,0 +1,17 @@ +Galaxy wrapper for VariantDB Import +=================================== + +This wrapper and VariantDB is written by Geert Vandeweyer. + +The recommended installation is by means of the toolshed_. + +.. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/vcf_to_variantdb + +Galaxy should be able to install the needed perl module dependencies automatically +for you. To allow your server to communicate with VariantDB, you must edit the GALAXY_URL environment variable in the file: + +<tool_dependency_dir>/environment_settings/GALAXY_URL/geert-vandeweyer/vcf_to_variantdb/<hash_string>/env.sh + +to point to the full URL of the server (e.g: http://biominavm-galaxy.biomina.be/galaxy ) where you have installed the wrapper. + +Finally, if you also have a private VariantDB instance, you need to add it to the wrapper configuration file, as an extra option.